CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
vacuole 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13320.1	KRG89812	AT2G41090.1	17360592
AT3G13320.1	KRG94975	AT2G41090.1	17360592
AT3G13320.1	KRH18664	AT2G41090.1	17360592
AT3G13320.1	KRG89812	AT2G41100.1	17360592
AT3G13320.1	KRG94975	AT2G41100.1	17360592
AT3G13320.1	KRH18664	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46490	Soybean	golgi, peroxisome, plasma membrane	88.3	93.46
KRH58038	Soybean	plasma membrane	60.26	90.7
VIT_19s0015g01320.t01	Wine grape	cytosol, peroxisome, vacuole	68.43	69.51
CDY23589	Canola	golgi, peroxisome, plasma membrane	63.36	67.53
CDY24195	Canola	golgi, peroxisome, plasma membrane	64.9	66.97
CDY43356	Canola	golgi, peroxisome, plasma membrane	65.34	66.97
Bra030840.1-P	Field mustard	plasma membrane	60.49	66.67
AT1G55730.2	Thale cress	plasma membrane	64.68	66.44
CDY10539	Canola	plasma membrane	60.04	66.18
CDY42379	Canola	plasma membrane	60.04	66.18
CDY44007	Canola	cytosol, peroxisome, plasma membrane	63.8	65.68
AT3G13320.1	Thale cress	golgi, peroxisome, vacuole	63.8	65.53
Bra034690.1-P	Field mustard	cytosol, peroxisome, plasma membrane	63.8	65.53
KRH23701	Soybean	golgi, peroxisome, plasma membrane	63.13	65.45
Os02t0138900-01	Rice	golgi, plasma membrane	35.76	64.54
KRH09614	Soybean	golgi, peroxisome, plasma membrane	61.59	64.29
GSMUA_Achr5P05070_001	Banana	cytosol, peroxisome, plasma membrane	64.02	64.16
CDX75703	Canola	peroxisome	65.12	64.13
CDY26090	Canola	plasma membrane	60.93	62.59
Bra039385.1-P	Field mustard	plasma membrane	64.9	62.29
AT1G55720.1	Thale cress	plasma membrane	61.81	59.96
KRH47395	Soybean	mitochondrion	29.14	59.73
Bra001499.1-P	Field mustard	mitochondrion	65.12	59.36
CDX82545	Canola	mitochondrion	65.12	59.0
EES06255	Sorghum	golgi, peroxisome, plasma membrane	55.85	58.97
GSMUA_Achr3P05320_001	Banana	cytosol, peroxisome, plasma membrane	58.94	58.17
TraesCS6D01G096900.1	Wheat	mitochondrion	58.28	57.64
TraesCS6B01G137200.1	Wheat	mitochondrion	58.06	57.42
TraesCS6A01G108700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, peroxisome	58.28	54.1
KRH38810	Soybean	extracellular, golgi, vacuole	28.7	52.85
KRH30353	Soybean	golgi, plasma membrane, vacuole	21.19	52.75
KRH38323	Soybean	endoplasmic reticulum, extracellular, vacuole	7.28	50.0
KRG98293	Soybean	cytosol, peroxisome, plasma membrane	43.27	44.95
KRH17032	Soybean	golgi, peroxisome, plasma membrane	42.6	43.67
KRH46489	Soybean	cytosol, peroxisome, plasma membrane	69.09	43.59
KRH00226	Soybean	plastid	42.38	42.76
KRH72673	Soybean	golgi, peroxisome, plasma membrane	42.38	42.67
KRH49368	Soybean	plastid	41.94	42.32
Zm00001d015225_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	44.59	41.82
KRH65744	Soybean	golgi, peroxisome, plasma membrane	41.5	41.69
KRH75989	Soybean	golgi, peroxisome, plasma membrane	41.72	41.45
KRH65739	Soybean	plastid	40.62	41.26
KRH32678	Soybean	mitochondrion, plasma membrane	14.13	28.96

Protein Annotations

Gene3D:1.20.1420.30	Gene3D:1.20.58.1130	EntrezGene:100775769	MapMan:24.2.9.1.1	EMBL:ACUP02010882	InterPro:CAX
InterPro:CaH_exchang	EnsemblPlantsGene:GLYMA_18G072200	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006812	GO:GO:0006816
GO:GO:0008150	GO:GO:0008324	GO:GO:0009705	GO:GO:0015369	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	GO:GO:0070588	GO:GO:0098655	UniProt:I1N063	EnsemblPlants:KRG98412	ProteinID:KRG98412
ProteinID:KRG98412.1	InterPro:NaCa_Exmemb	PFAM:PF01699	PANTHER:PTHR31503	PANTHER:PTHR31503:SF34	TIGRFAMs:TIGR00378
TIGRFAMs:TIGR00846	TMHMM:TMhelix	UniParc:UPI000233F3C0	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:6797592..6802866

Molecular Weight (calculated)

49230.4 Da

IEP (calculated)

4.949

GRAVY (calculated)

0.524

Length

453 amino acids

Sequence
(BLAST)

001: METPVEVKPT RVASGFLDDL SETCKMGTPN GRAMCKSDDE VPFDSEINFH LSESILVDVR GSHSGESQTA RHETLAGIIY KSIRVVVFSN KLNLLMPFGP
101: LAILVQKLTG HLGWVFGPSL LGIVPLAERL GYATEQLAFY TGDTVGGLLN ATFGNATELI ISIYALKSGM TRVVQLSLLG SILSNMLLVL GCAFLCGGIV
201: NHKKEQVFNK AAASVNSGLL LMAVMGILFP AVLHYTHTEV RVGKSELSLS RLSSCIMLVA YVAYLFFQLK SQRSLYVSVN EDESQNGNNS NDDESPDISK
301: WETLIWLSVM TAWISILSEY LVGAMEGASM AWEIPVAFIS VILLPLVGNA AEHASAIMFA MKDKLDISLG VAIGSSTQIS MFVIPFCVVI GWIIGQPMDL
401: NFQLFETAAL FLTVIVVAFM LQEGTANYFK GLMLILCYLI VAASFYVHVD SSQ

Best Arabidopsis Sequence Match ( AT1G55730.2 )
(BLAST)

001: MGCCKVPALI QAQVEMGLVN DVEHKSLFRR DTDSPERKAA SLMEQGSLSA SFRECSTKTP NNSVLQSFKI VILSNKLNLL LPFGPLAILL HYLTDNKGWI
101: FLLSLVGITP LAERLGYATE QLACYTGSTV GGLLNATFGN VTELIISIFA LKSGMIRVVQ LTLLGSILSN MLLVLGCAFF CGGLVFSQKE QVFDKGNAVV
201: NSGLLLMAVM GLLFPAVLHY THSEVHAGSS ELALSRFSSC IMLVAYAAYL FFQLKSQPSS YTPLTEETNQ NEETSDDDED PEISKWEAII WLSILTAWVS
301: LLSGYLVDAI EGASVSWKIP ISFISVILLP IVGNAAEHAG AIMFAMKDKL DLSLGVAIGS SIQISMFAVP FCVVIGWMMG AQMDLNFQLF ETATLFITVI
401: VVAFFLQEGT SNYFKGLMLI LCYLIVAASF FVHEDPHQDD I

Arabidopsis Description

CAX5Vacuolar cation/proton exchanger 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L783]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.