CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	golgi, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13320.1	EES01631	AT2G41090.1	17360592
AT3G13320.1	EES09201	AT2G41090.1	17360592
AT3G13320.1	EES16322	AT2G41090.1	17360592
AT3G13320.1	OQU78227	AT2G41090.1	17360592
AT3G13320.1	EES01631	AT2G41100.1	17360592
AT3G13320.1	EES09201	AT2G41100.1	17360592
AT3G13320.1	EES16322	AT2G41100.1	17360592
AT3G13320.1	OQU78227	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0138900-01	Rice	golgi, plasma membrane	41.72	71.31
TraesCS6D01G096900.1	Wheat	mitochondrion	74.13	69.43
TraesCS6B01G137200.1	Wheat	mitochondrion	73.89	69.21
KRH58038	Soybean	plasma membrane	45.69	65.12
TraesCS6A01G108700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, peroxisome	73.89	64.96
Solyc12g011070.1.1	Tomato	plasma membrane	49.65	62.28
GSMUA_Achr5P05070_001	Banana	cytosol, peroxisome, plasma membrane	64.8	61.5
Bra030840.1-P	Field mustard	plasma membrane	57.81	60.34
CDY42379	Canola	plasma membrane	57.58	60.1
AT1G55730.2	Thale cress	plasma membrane	61.77	60.09
CDY23589	Canola	golgi, peroxisome, plasma membrane	59.44	60.0
VIT_19s0015g01320.t01	Wine grape	cytosol, peroxisome, vacuole	62.0	59.64
CDY10539	Canola	plasma membrane	57.11	59.61
PGSC0003DMT400079826	Potato	cytosol, peroxisome, plasma membrane	60.14	59.04
KRH46490	Soybean	golgi, peroxisome, plasma membrane	58.74	58.88
CDY24195	Canola	golgi, peroxisome, plasma membrane	60.14	58.77
KXG27283	Sorghum	plastid	56.64	58.7
AT3G13320.1	Thale cress	golgi, peroxisome, vacuole	60.14	58.5
CDY44007	Canola	cytosol, peroxisome, plasma membrane	59.67	58.18
Bra034690.1-P	Field mustard	cytosol, peroxisome, plasma membrane	59.67	58.05
Solyc07g056110.2.1	Tomato	cytosol, peroxisome, plasma membrane	61.07	57.96
CDY43356	Canola	golgi, peroxisome, plasma membrane	59.67	57.92
Zm00001d015225_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	64.1	56.94
CDX75703	Canola	peroxisome	60.84	56.74
EER94732	Sorghum	cytosol, peroxisome, plasma membrane	58.74	56.63
KRG98412	Soybean	plasma membrane	58.97	55.85
CDY26090	Canola	plasma membrane	57.34	55.78
GSMUA_Achr3P05320_001	Banana	cytosol, peroxisome, plasma membrane	58.28	54.47
AT1G55720.1	Thale cress	plasma membrane	59.21	54.39
PGSC0003DMT400020114	Potato	cytosol, peroxisome, plasma membrane	57.34	54.07
Bra039385.1-P	Field mustard	plasma membrane	59.21	53.81
Bra001499.1-P	Field mustard	mitochondrion	60.84	52.52
CDX82545	Canola	mitochondrion	61.07	52.4
OQU86993	Sorghum	plasma membrane	30.07	41.61
KRH47395	Soybean	mitochondrion	21.21	41.18
KXG22713	Sorghum	plasma membrane	43.59	37.25
EES04904	Sorghum	cytosol, peroxisome, vacuole	36.6	34.28
KRH46489	Soybean	cytosol, peroxisome, plasma membrane	55.94	33.43
VIT_12s0057g01500.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	61.07	23.75

Protein Annotations

Gene3D:1.20.1420.30	Gene3D:1.20.58.1130	MapMan:24.2.9.1.1	UniProt:C5XUJ0	InterPro:CAX	InterPro:CaH_exchang
EnsemblPlants:EES06255	ProteinID:EES06255	ProteinID:EES06255.2	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006812	GO:GO:0006816	GO:GO:0008150	GO:GO:0008324	GO:GO:0015369
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:0070588	GO:GO:0098655	InterPro:NaCa_Exmemb
PFAM:PF01699	PANTHER:PTHR31503	PANTHER:PTHR31503:SF34	EnsemblPlantsGene:SORBI_3004G036400	TIGRFAMs:TIGR00378	TIGRFAMs:TIGR00846
TMHMM:TMhelix	UniParc:UPI0007F194DB	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:2924622..2927441

Molecular Weight (calculated)

46297.5 Da

IEP (calculated)

4.913

GRAVY (calculated)

0.485

Length

429 amino acids

Sequence
(BLAST)

001: MATDSADSQR LLLGRQTQAD GADEFEDNNL AAPEPLSHNT GASFQRNPRS TNSGVFGSLK IVLLKSKLNL LIPCGFLAIL MDYLSQNKAW VFPLSLLGII
101: PLAERLGFAT EQLGLFTGRT AGGLLNATFG NATELVISIH ALRSGKLRVV QQSLLGSILS NTLLVLGCAF FGGGLTCGKS EQIFRKEDAV LNSGLLLMAV
201: MGLVSPAMLY YTHTEVNLGK SALALSRFSS CIMLFAYAAF IFFELSNSRR RDESRGGDQG DDDCEYAFPE ISKWEAIAWL AIFTAWISVF SDFLVEAIEG
301: ASKAWKIPVA FISTVLLPIV GNAAEHASAV MFAMKDKLDL SLGVAIGSST QISMFVIPFS VVAGWMMGQP MDLNFHLFET ASLLITVLVV ALLLQDGTSN
401: CFKGLMLILC YLIVAASFYV YADPNIDGV

Best Arabidopsis Sequence Match ( AT1G55730.2 )
(BLAST)

001: MGCCKVPALI QAQVEMGLVN DVEHKSLFRR DTDSPERKAA SLMEQGSLSA SFRECSTKTP NNSVLQSFKI VILSNKLNLL LPFGPLAILL HYLTDNKGWI
101: FLLSLVGITP LAERLGYATE QLACYTGSTV GGLLNATFGN VTELIISIFA LKSGMIRVVQ LTLLGSILSN MLLVLGCAFF CGGLVFSQKE QVFDKGNAVV
201: NSGLLLMAVM GLLFPAVLHY THSEVHAGSS ELALSRFSSC IMLVAYAAYL FFQLKSQPSS YTPLTEETNQ NEETSDDDED PEISKWEAII WLSILTAWVS
301: LLSGYLVDAI EGASVSWKIP ISFISVILLP IVGNAAEHAG AIMFAMKDKL DLSLGVAIGS SIQISMFAVP FCVVIGWMMG AQMDLNFQLF ETATLFITVI
401: VVAFFLQEGT SNYFKGLMLI LCYLIVAASF FVHEDPHQDD I

Arabidopsis Description

CAX5Vacuolar cation/proton exchanger 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L783]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.