CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
vacuole 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13320.1	KRG89812	AT2G41090.1	17360592
AT3G13320.1	KRG94975	AT2G41090.1	17360592
AT3G13320.1	KRH18664	AT2G41090.1	17360592
AT3G13320.1	KRG89812	AT2G41100.1	17360592
AT3G13320.1	KRG94975	AT2G41100.1	17360592
AT3G13320.1	KRH18664	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58038	Soybean	plasma membrane	31.89	76.08
KRH46490	Soybean	golgi, peroxisome, plasma membrane	43.73	73.36
KRG98412	Soybean	plasma membrane	43.59	69.09
CDY23589	Canola	golgi, peroxisome, plasma membrane	37.19	62.82
Os02t0138900-01	Rice	golgi, plasma membrane	21.73	62.15
AT1G55730.2	Thale cress	plasma membrane	38.16	62.13
CDY43356	Canola	golgi, peroxisome, plasma membrane	38.16	61.99
CDY24195	Canola	golgi, peroxisome, plasma membrane	37.88	61.96
VIT_19s0015g01320.t01	Wine grape	cytosol, peroxisome, vacuole	38.44	61.88
CDY44007	Canola	cytosol, peroxisome, plasma membrane	37.47	61.14
Bra034690.1-P	Field mustard	cytosol, peroxisome, plasma membrane	37.47	61.0
CDY10539	Canola	plasma membrane	34.68	60.58
Bra030840.1-P	Field mustard	plasma membrane	34.68	60.58
AT3G13320.1	Thale cress	golgi, peroxisome, vacuole	37.19	60.54
CDY42379	Canola	plasma membrane	34.54	60.34
KRH23701	Soybean	golgi, peroxisome, plasma membrane	36.49	59.95
KRH09614	Soybean	golgi, peroxisome, plasma membrane	35.79	59.22
GSMUA_Achr5P05070_001	Banana	cytosol, peroxisome, plasma membrane	37.05	58.85
CDX75703	Canola	peroxisome	37.6	58.7
Bra039385.1-P	Field mustard	plasma membrane	37.88	57.63
CDY26090	Canola	plasma membrane	34.96	56.92
AT1G55720.1	Thale cress	plasma membrane	36.63	56.32
EES06255	Sorghum	golgi, peroxisome, plasma membrane	33.43	55.94
Bra001499.1-P	Field mustard	mitochondrion	37.74	54.53
CDX82545	Canola	mitochondrion	37.74	54.2
GSMUA_Achr3P05320_001	Banana	cytosol, peroxisome, plasma membrane	34.26	53.59
TraesCS6D01G096900.1	Wheat	mitochondrion	33.43	52.4
TraesCS6B01G137200.1	Wheat	mitochondrion	33.01	51.75
KRH47395	Soybean	mitochondrion	15.6	50.68
KRH30353	Soybean	golgi, plasma membrane, vacuole	12.53	49.45
TraesCS6A01G108700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, peroxisome	33.29	48.98
KRH38323	Soybean	endoplasmic reticulum, extracellular, vacuole	4.46	48.48
KRH38810	Soybean	extracellular, golgi, vacuole	15.46	45.12
KRG98293	Soybean	cytosol, peroxisome, plasma membrane	25.07	41.28
Zm00001d015225_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	26.6	39.54
KRH17032	Soybean	golgi, peroxisome, plasma membrane	24.09	39.14
KRH00226	Soybean	plastid	23.96	38.31
KRH72673	Soybean	golgi, peroxisome, plasma membrane	23.96	38.22
KRH49368	Soybean	plastid	23.54	37.64
KRH65744	Soybean	golgi, peroxisome, plasma membrane	23.54	37.47
KRH75989	Soybean	golgi, peroxisome, plasma membrane	23.68	37.28
KRH65739	Soybean	plastid	23.12	37.22
KRH32678	Soybean	mitochondrion, plasma membrane	7.52	24.43

Protein Annotations

Gene3D:1.20.1420.30	Gene3D:1.20.58.1130	EntrezGene:100799808	MapMan:24.2.9.1.1	EMBL:ACUP02005346	InterPro:CAX
InterPro:CaH_exchang	EnsemblPlantsGene:GLYMA_08G336900	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006812	GO:GO:0006816
GO:GO:0008150	GO:GO:0008324	GO:GO:0009705	GO:GO:0015369	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	GO:GO:0070588	GO:GO:0098655	UniProt:K7LAF9	EnsemblPlants:KRH46489	ProteinID:KRH46489
ProteinID:KRH46489.1	InterPro:NaCa_Exmemb	PFAM:PF01699	PANTHER:PTHR31503	PANTHER:PTHR31503:SF34	TIGRFAMs:TIGR00378
TIGRFAMs:TIGR00846	TMHMM:TMhelix	UniParc:UPI000296F7FC	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:45375224..45386486

Molecular Weight (calculated)

79788.9 Da

IEP (calculated)

4.959

GRAVY (calculated)

0.032

Length

718 amino acids

Sequence
(BLAST)

001: MSFSIVIHNM GSWVNEPQLY YKGGEVHVIH GLDVSKWSYF EAMRVLTELG YKGDGDMKMW WKGKGTDFDS LRDFVLDQDA MDLANYALTH NCEVEIYVQH
101: GVGVLVENDS ICKMIVNGEQ CHNGSLEQCG NVQESGNLNQ LGNVKQSGNV DQSSGGEDLE KSNFNASAEE RDLGMEDGFD LPEVGHVKAT LNKKVDKMKN
201: KVEGVTRGYG TRQRKNKDIA RRDNDHKVNV PDDADSLYKM ESSYYSDELD SDIGQDDDIE SHATKHVTFK KEDMRNFIKQ SLLLSEYSIQ IGSHNERPMH
301: KSDDEVSFGS EIINFNQPES IDLLEIHGSH YGESRTVHHE TMAGMIYRSI RVVLLSSKLN LLMPFGPLAI LVQILTGHHG WIFGLSLLGI MPMAERLDYV
401: TKKLTLYTGH TVGVGGIFNA SFGNATELII SLCALKSGMI RAVQLSLLGS IFFNMLLVLG CAFFRGGIVS NKKEQVFNKE IASVNSGLLL MAVMGILLPA
501: ALHYTQAEVH VGESELSLSR FSSCIMLVAY VACLFFQFKS QRSLYVPVNE EGGHNGYNSN DDESPYISKW ESIIWLSVFT TWTSMLSQYL VDTLEGASTA
601: WGIPVAFISV ILLPLVGNVS DIIFSMEDKL DISLGVAIGS STQISMFVIP FCVVIGWMMG QPMDLNFHLF ETAALFLTVI VVAIMLQEGT ANYFKGLLLI
701: LCYLIVAASF YVHLDSSQ

Best Arabidopsis Sequence Match ( AT1G55720.1 )
(BLAST)

001: MYMELYLMFS NFFKSIRWCK VPAFMQAKVE MGLVNEVELK SLLEQETDSP QTNAASLMEQ GSLRERRAKA PRNSVVQSFK IVILSNKLNL LLPFGPLAIL
101: VHYLTDNKGW FFLLSLVGIT PLAERLGYAT EQLSCYTGAT VGGLLNATFG NVIELIISII ALKNGMIRVV QLTLLGSILS NILLVLGCAF FCGGLVFPGK
201: DQVFDKRNAV VSSGMLLMAV MGLLFPTFLH YTHSEVHAGS SELALSRFIS CIMLVAYAAY LFFQLKSQPS FYTEKTNQNE ETSNDDEDPE ISKWEAIIWL
301: SIFTAWVSLL SGYLVDAIEG TSVSWKIPIS FISVILLPIV GNAAEHAGAI MFAMKDKLDL SLGVAIGSSI QISMFAVPFC VVIGWMMGAQ MDLNLQLFET
401: ATLLITVIVV AFFLQLEGTS NYFKRLMLIL CYLIVAASFF VHEDPHQGTD HQQICTCRTP SYTYEIL

Arabidopsis Description

ATCAX6cation exchanger 6 [Source:TAIR;Acc:AT1G55720]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.