Factsheet for VIT_19s0015g01320.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
vacuole 3
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, vacuole
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13320.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT3G13320.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT3G13320.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT3G13320.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58038	Soybean	plasma membrane	52.24	77.41
KRH46490	Soybean	golgi, peroxisome, plasma membrane	69.73	72.66
CDY23589	Canola	golgi, peroxisome, plasma membrane	67.71	71.06
Bra030840.1-P	Field mustard	plasma membrane	65.02	70.56
CDY42379	Canola	plasma membrane	64.8	70.32
AT1G55730.2	Thale cress	plasma membrane	69.51	70.29
GSMUA_Achr5P05070_001	Banana	cytosol, peroxisome, plasma membrane	71.08	70.13
CDY10539	Canola	plasma membrane	64.35	69.83
CDY24195	Canola	golgi, peroxisome, plasma membrane	68.61	69.7
CDY44007	Canola	cytosol, peroxisome, plasma membrane	68.61	69.55
Bra034690.1-P	Field mustard	cytosol, peroxisome, plasma membrane	68.61	69.39
CDY43356	Canola	golgi, peroxisome, plasma membrane	68.61	69.23
AT3G13320.1	Thale cress	golgi, peroxisome, vacuole	68.39	69.16
KRG98412	Soybean	plasma membrane	69.51	68.43
CDX75703	Canola	peroxisome	69.28	67.17
VIT_09s0018g01840.t01	Wine grape	plasma membrane	68.16	67.11
Os02t0138900-01	Rice	golgi, plasma membrane	37.67	66.93
CDY26090	Canola	plasma membrane	64.8	65.53
Bra039385.1-P	Field mustard	plasma membrane	68.39	64.62
AT1G55720.1	Thale cress	plasma membrane	66.82	63.81
GSMUA_Achr3P05320_001	Banana	cytosol, peroxisome, plasma membrane	64.57	62.75
Bra001499.1-P	Field mustard	mitochondrion	69.51	62.37
EES06255	Sorghum	golgi, peroxisome, plasma membrane	59.64	62.0
CDX82545	Canola	mitochondrion	69.28	61.8
TraesCS6B01G137200.1	Wheat	mitochondrion	60.31	58.73
TraesCS6D01G096900.1	Wheat	mitochondrion	60.31	58.73
TraesCS6A01G108700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, peroxisome	60.54	55.33
KRH47395	Soybean	mitochondrion	25.34	51.13
VIT_08s0007g02240.t01	Wine grape	golgi, peroxisome, plasma membrane	43.95	43.75
Zm00001d015225_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	46.19	42.65
VIT_06s0004g06570.t01	Wine grape	cytosol, peroxisome, plasma membrane	42.38	42.38
KRH46489	Soybean	cytosol, peroxisome, plasma membrane	61.88	38.44
VIT_14s0083g00390.t01	Wine grape	cytosol	12.11	33.96
VIT_12s0057g01500.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	72.42	29.28

Protein Annotations

Gene3D:1.20.1420.30	Gene3D:1.20.58.1130	EntrezGene:100249832	wikigene:100249832	MapMan:24.2.9.1.1	InterPro:CAX
ProteinID:CBI39814	ProteinID:CBI39814.3	InterPro:CaH_exchang	UniProt:D7UAP9	EMBL:FN596747	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0006810	GO:GO:0006812	GO:GO:0006816	GO:GO:0008150	GO:GO:0008324	GO:GO:0009705
GO:GO:0015369	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:0070588	GO:GO:0098655
EntrezGene:LOC100249832	wikigene:LOC100249832	InterPro:NaCa_Exmemb	PFAM:PF01699	PANTHER:PTHR31503	PANTHER:PTHR31503:SF34
TIGRFAMs:TIGR00378	TIGRFAMs:TIGR00846	TMHMM:TMhelix	UniParc:UPI0001BE5437	ArrayExpress:VIT_19s0015g01320	EnsemblPlantsGene:VIT_19s0015g01320
EnsemblPlants:VIT_19s0015g01320.t01	unigene:Vvi.21380	RefSeq:XP_002269027	RefSeq:XP_002269027.2	SEG:seg	:

Description

No Description!

Coordinates

chr19:-:9497776..9504060

Molecular Weight (calculated)

48747.0 Da

IEP (calculated)

5.033

GRAVY (calculated)

0.618

Length

446 amino acids

Sequence
(BLAST)

001: MSINSFVGQI NMEMGSLEER SNHELEDESL ISPAKIGQKT NSFHAPQLGS SCRDWRIWSS KLLGNAVFMS IRVVVFSSKL NLLMPFGPLA VLVHGLSDHN
101: GWVFFLTLLG ITPLAERLGY ATEQLSFYTG DTVGGLLNAT FGNATELIIS IYALKSGMIR VVQQSLLGSI LSNMLLVLGC AFFCGGIVFN NKQQVFNKAI
201: AVLNSGLLLM AVMGLLFPAV LHFTHTEVHF GRSELALSRF SSCIMLLAYA GYLVFQLKSQ KDLYMSIAEG GTLPEEGSDD DEGPEISKWE SVIWLSILTA
301: WIAILSEYLV DAIEGASIAW KMPVSFISVI LLPIVGNAAE HASAIMFAMK DKLDISLGVA IGSSTQISMF AIPFCVVIGW IMGCPMDLNF QLFETATLFI
401: TVLVVAFLLQ EGTSNYFKGL MLILCYLIVA ASFFVHVDPT LVEHKT

Best Arabidopsis Sequence Match ( AT1G55730.2 )
(BLAST)

001: MGCCKVPALI QAQVEMGLVN DVEHKSLFRR DTDSPERKAA SLMEQGSLSA SFRECSTKTP NNSVLQSFKI VILSNKLNLL LPFGPLAILL HYLTDNKGWI
101: FLLSLVGITP LAERLGYATE QLACYTGSTV GGLLNATFGN VTELIISIFA LKSGMIRVVQ LTLLGSILSN MLLVLGCAFF CGGLVFSQKE QVFDKGNAVV
201: NSGLLLMAVM GLLFPAVLHY THSEVHAGSS ELALSRFSSC IMLVAYAAYL FFQLKSQPSS YTPLTEETNQ NEETSDDDED PEISKWEAII WLSILTAWVS
301: LLSGYLVDAI EGASVSWKIP ISFISVILLP IVGNAAEHAG AIMFAMKDKL DLSLGVAIGS SIQISMFAVP FCVVIGWMMG AQMDLNFQLF ETATLFITVI
401: VVAFFLQEGT SNYFKGLMLI LCYLIVAASF FVHEDPHQDD I

Arabidopsis Description

CAX5Vacuolar cation/proton exchanger 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L783]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.