Factsheet for VIT_12s0057g01500.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
vacuole 2
extracellular 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079826	Potato	cytosol, peroxisome, plasma membrane	29.1	73.46
Solyc12g011070.1.1	Tomato	plasma membrane	22.76	73.39
VIT_19s0015g01320.t01	Wine grape	cytosol, peroxisome, vacuole	29.28	72.42
GSMUA_Achr5P05070_001	Banana	cytosol, peroxisome, plasma membrane	29.01	70.8
Solyc07g056110.2.1	Tomato	cytosol, peroxisome, plasma membrane	28.83	70.35
VIT_09s0018g01840.t01	Wine grape	plasma membrane	27.56	67.11
Os02t0138900-01	Rice	golgi, plasma membrane	15.14	66.53
PGSC0003DMT400020114	Potato	cytosol, peroxisome, plasma membrane	26.93	65.27
GSMUA_Achr3P05320_001	Banana	cytosol, peroxisome, plasma membrane	26.29	63.18
EES06255	Sorghum	golgi, peroxisome, plasma membrane	23.75	61.07
TraesCS6D01G096900.1	Wheat	mitochondrion	24.84	59.83
TraesCS6B01G137200.1	Wheat	mitochondrion	24.66	59.39
TraesCS6A01G108700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, peroxisome	25.29	57.17
Zm00001d015225_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	20.13	45.96
VIT_06s0004g06570.t01	Wine grape	cytosol, peroxisome, plasma membrane	17.86	44.17
VIT_08s0007g02240.t01	Wine grape	golgi, peroxisome, plasma membrane	17.77	43.75
VIT_14s0083g00390.t01	Wine grape	cytosol	4.9	33.96

Protein Annotations

Gene3D:1.20.1420.30	Gene3D:1.20.58.1130	EntrezGene:100244138	wikigene:100244138	MapMan:24.2.9.1.1	Gene3D:3.30.70.330
InterPro:CAX	ProteinID:CCB51759	ProteinID:CCB51759.1	InterPro:CaH_exchang	UniProt:F6HHR3	EMBL:FN595759
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006812
GO:GO:0006816	GO:GO:0008150	GO:GO:0008324	GO:GO:0009705	GO:GO:0015369	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	GO:GO:0070588	GO:GO:0098655	InterPro:IPR000504	InterPro:IPR012677
EntrezGene:LOC100244138	wikigene:LOC100244138	InterPro:NaCa_Exmemb	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF01699
PFAM:PF07744	PFscan:PS50102	PANTHER:PTHR31503	PANTHER:PTHR31503:SF34	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	InterPro:SPOC_C	SUPFAM:SSF54928	TIGRFAMs:TIGR00378	TIGRFAMs:TIGR00846	TMHMM:TMhelix
UniParc:UPI0002107F80	ArrayExpress:VIT_12s0057g01500	EnsemblPlantsGene:VIT_12s0057g01500	EnsemblPlants:VIT_12s0057g01500.t01	RefSeq:XP_002266383	RefSeq:XP_002266383.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:10215103..10237449

Molecular Weight (calculated)

122800.0 Da

IEP (calculated)

6.604

GRAVY (calculated)

-0.196

Length

1103 amino acids

Sequence
(BLAST)

0001: MGSLEERAVL EFEDESLFSP DSASRKTHSR EGPLVLAPSP ASETSGTKCM SNSIFNSIKV VVFSTKINLL VPFGPAAILV DKFTNNHGWV FFLSLLGIIP
0101: LAERLGYATE QLALFTGPTV GGLLNATFGN ATELIISVYA LKNGMIRVVQ QSLLGSILSN MLLVLGCAFF SGGMVFSKKE QVFSKAAAGV NSGLLLMAVM
0201: GLLFPAVLHF THTELHFGSS ELALSRFSSC IMLVAYAAYL VFQLKSQKNL YVPVDEGGDQ TEGDEDEAPE ISKWESIIWL TILTLWISVL SEYLVNAIEG
0301: ASVAWKMPIA FISVILLPIV GNAAEHASAI IFAMKDKLDI SLGVAIGSST QISMFGIPFC VVVGWIMGRP MDLNFQLFET ATLFMTVIVV AFMLQEGTSN
0401: YFKGIMLIFC YLIVAASFFV HIDPTSIGEL LFTSDKKKKE KMTGRGARER FRRDYPPRFE EKSHSGRSSH PPSRHLWVGN LSHSISENTL TDPFLQFGEL
0501: DTVAFQPGRS YAFINFKQEE DAIHAMRSLQ GFSVAGMPLK IEFAKAEKSS TASRDEDYLQ RRDEQRSTIR GSPFSQRDSR TRHGSPDTFY PDKSSISDRK
0601: GEPCEVLWIG FPSLLKVDET ILRKAFSPFG EIEKITSFPG RSYAFVQFRS VTAACRAKET LQGKLFGNPR VHICFAKSEP GPSNGGRNTM NAPPSPHFQS
0701: NSRPGSSENF RQERNFGNFP GDPSVRSPRF ISNLETEDSD VIDFGRKSTL WTDGNGTFEH RRFRDMGSEL GASADVYEHH SSPTRDRVAH FRDFSPQKFP
0801: RRSPFYEDPW DLPEDAYLFH GAKKLKTGSF PPEKELPEYP FSVAEQEKHL LPRIFSDYPQ PEAIDKNYEP GSFGYKQMSD HPMNLTRPHG EMSEQWKASY
0901: DGFQVGSGSL SSNPVDWKRL TPESHPSSLS GEWKWEGTIA KGGSSICRAR CFPVGKVMDI MLPEFLDCTA RTGLDMLAKH YYQAASAWVV FFVPESDADI
1001: GYYNEFMNYL GEKQRAAVAK LDERTTLFLV PPSEFSEKVL KVPGKLSISG VVLRLENPGS NFGSLDQPQA PSFMSFHGDT QYPKPTSPSG LLCPCCWWCI
1101: QFH

Best Arabidopsis Sequence Match ( AT4G12640.1 )
(BLAST)

001: MSSRGRERMM MKEDGRGRNP PSRHLWVGNL PHGILERELA DRFLRFGELE SLAFQPGRSY AFVNFNHDED AFAAIESLQG FPLSGNPLRI EFAKAEKSST
101: GSRTDDIYRH DEQRSAARGS SFVQRDSRMR YESPDTYSKS KMNDRNAEPS EVLYIGFPAS LKVDDALLRN VFSSFGEITK VTVFPGRSYA FVQFRNLMAA
201: CKAKESLQGK LFGNPRVHIC FAKSEPSSSG SGRGPSGRSL SPPYRSVDRL GSSEGYLQDR NYGSISRIPS VREPHYIEDR DLEDSEGYIF NRKRDSSSDG
301: GPAYGRSRST HRFPQDMHEY HGSPGEMGTS FRDNPHRFQT RSSEYEEPWD LPEDDYYYQE IKRLKTRSSQ PERQLPGHQL SGIEQERRPF SRASADFSPK
401: DAFERNYEAG QLRYNQTVEQ PLNLAIRNGD KSSLREPHEE LMGGYPLPSV VPERKRYTPE LNRPSLKDWN WEGTIAKGGN PICRAKCFPV GKVMDMMLPE
501: FLDCTARTGL DMLAKHYYQS SKAWVVFFVP GSDADIVFYD EFMHYLEEKQ RAAVSKLDDT TTLFLVPPSD FSEKVLKVPG KLSISGVILR LECGGSGSGG
601: PVQQQGERKD TDLLTYYGET SYSEASGAFP DVGNPRIPGP TAFLRSAGRD NQSASMDPYV EDKHDQLSHR YSGSDWPPRD TNPRSSPFID HTVQKHSGFV
701: PGKQQNADLS RYHDTETPVP AGFQPEQLTH LASSLPRQQQ QVQNTPNQPE RYAPEGRASF SHLQHAQTPS IPQLVTPQNQ NVQIQSSNSQ QQEETEANPQ
801: KRLQATLQLA AALLQQIQQA KPS

Arabidopsis Description

RNA recognition motif (RRM)-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JRD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.