Factsheet for PGSC0003DMT400020114

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
vacuole 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g011070.1.1	Tomato	plasma membrane	70.33	93.57
PGSC0003DMT400079826	Potato	cytosol, peroxisome, plasma membrane	73.41	76.43
Os02t0138900-01	Rice	golgi, plasma membrane	35.82	64.94
GSMUA_Achr5P05070_001	Banana	cytosol, peroxisome, plasma membrane	61.76	62.17
PGSC0003DMT400023736	Potato	golgi, peroxisome, plasma membrane	58.02	60.83
GSMUA_Achr3P05320_001	Banana	cytosol, peroxisome, plasma membrane	58.46	57.95
EES06255	Sorghum	golgi, peroxisome, plasma membrane	54.07	57.34
TraesCS6B01G137200.1	Wheat	mitochondrion	53.85	53.49
TraesCS6D01G096900.1	Wheat	mitochondrion	53.63	53.28
TraesCS6A01G108700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, peroxisome	54.29	50.61
PGSC0003DMT400010643	Potato	plasma membrane	41.54	44.37
PGSC0003DMT400030772	Potato	plasma membrane, plastid	41.54	41.45
Zm00001d015225_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	42.2	39.75
VIT_12s0057g01500.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	65.27	26.93

Protein Annotations

EnsemblPlants:PGSC0003DMT400020114	EnsemblPlantsGene:PGSC0003DMG400007792	Gene3D:1.20.1420.30	Gene3D:1.20.58.1130	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:NaCa_Exmemb	PANTHER:PTHR31503
PANTHER:PTHR31503:SF34	PFAM:PF01699	PGSC:PGSC0003DMG400007792	TMHMM:TMhelix	UniParc:UPI000295268B	UniProt:M1AD07
MapMan:24.2.9.1.1	:	:	:	:	:

Description

Vacuolar cation/proton exchanger [Source:PGSC_GENE;Acc:PGSC0003DMG400007792]

Coordinates

chr12:+:1248366..1252545

Molecular Weight (calculated)

50153.5 Da

IEP (calculated)

4.722

GRAVY (calculated)

0.521

Length

455 amino acids

Sequence
(BLAST)

001: MGSSEQRAVL QLEDENLVRL EHFDRKASSL GTAPQRSSYD LEADDDSHKS ILYSIRRNIK IFFFSNKLNI LVPCGPLAIL VDELTDQHGW TFILSLLGII
101: PLAERLVGGL LNATFGNATE LIISMYALKS GMIRVVQQSL LGSILSNTLL VLGCAFFGGG VVHSNKEQLF DKGTAGMNSG LLLMAVMCLL FPAVLHVTHT
201: EVHFGKSELA LSRFSSCIML IAYGAYLFFQ LTNQKNLYMP MAEEEDHIDG SADDEETPEI SKWWSILWLS VMTLWIAVLS EYLVNTIEGA SVEMNIPVAF
301: ISVIVLPIVG NAAEHAGAVM FACKDKLVHS SPFFLTKAND LQSPSLIYVV SVQDISLGVA IGSSTQIAMF GIPFCVVVGW IIGSPMNLDF QMFETATLFM
401: TVLVVAFMLQ DGTSNYFKGL MLLFCYLIVA ASFFVHIDPE SIREFPPSLR AILIW

Best Arabidopsis Sequence Match ( AT1G55720.1 )
(BLAST)

001: MYMELYLMFS NFFKSIRWCK VPAFMQAKVE MGLVNEVELK SLLEQETDSP QTNAASLMEQ GSLRERRAKA PRNSVVQSFK IVILSNKLNL LLPFGPLAIL
101: VHYLTDNKGW FFLLSLVGIT PLAERLGYAT EQLSCYTGAT VGGLLNATFG NVIELIISII ALKNGMIRVV QLTLLGSILS NILLVLGCAF FCGGLVFPGK
201: DQVFDKRNAV VSSGMLLMAV MGLLFPTFLH YTHSEVHAGS SELALSRFIS CIMLVAYAAY LFFQLKSQPS FYTEKTNQNE ETSNDDEDPE ISKWEAIIWL
301: SIFTAWVSLL SGYLVDAIEG TSVSWKIPIS FISVILLPIV GNAAEHAGAI MFAMKDKLDL SLGVAIGSSI QISMFAVPFC VVIGWMMGAQ MDLNLQLFET
401: ATLLITVIVV AFFLQLEGTS NYFKRLMLIL CYLIVAASFF VHEDPHQGTD HQQICTCRTP SYTYEIL

Arabidopsis Description

ATCAX6cation exchanger 6 [Source:TAIR;Acc:AT1G55720]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.