CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026479_P006	Maize	plastid	95.89	92.54
Os04t0653200-01	Rice	golgi, peroxisome, plasma membrane	91.06	90.41
TraesCS2D01G507000.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	85.27	84.25
TraesCS2A01G506200.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	85.27	84.25
TraesCS2B01G534600.1	Wheat	golgi, peroxisome, plastid, vacuole	84.78	83.77
HORVU2Hr1G112420.3	Barley	cytosol	85.02	79.46
GSMUA_Achr3P05680_001	Banana	plasma membrane	73.67	76.25
Solyc03g123790.2.1	Tomato	plasma membrane	70.05	75.72
EER94732	Sorghum	cytosol, peroxisome, plasma membrane	74.88	69.66
Solyc12g055750.1.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	71.5	68.2
PGSC0003DMT400023736	Potato	golgi, peroxisome, plasma membrane	71.01	67.74
KRH23701	Soybean	golgi, peroxisome, plasma membrane	71.01	67.28
KRH09614	Soybean	golgi, peroxisome, plasma membrane	69.57	66.36
VIT_09s0018g01840.t01	Wine grape	plasma membrane	71.26	65.12
EES06255	Sorghum	golgi, peroxisome, plasma membrane	58.7	56.64
OQU86993	Sorghum	plasma membrane	33.57	44.84
KXG22713	Sorghum	plasma membrane	44.44	36.65
EES04904	Sorghum	cytosol, peroxisome, vacuole	37.2	33.62
VIT_14s0083g00390.t01	Wine grape	cytosol	11.84	30.82

Protein Annotations

Gene3D:1.20.1420.30	Gene3D:1.20.58.1130	MapMan:24.2.9.1.1	UniProt:A0A1B6PNP6	InterPro:CAX	InterPro:CaH_exchang
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0006816
GO:GO:0008150	GO:GO:0008324	GO:GO:0015369	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
GO:GO:0070588	GO:GO:0098655	EnsemblPlants:KXG27283	ProteinID:KXG27283	ProteinID:KXG27283.1	InterPro:NaCa_Exmemb
PFAM:PF01699	PANTHER:PTHR31503	PANTHER:PTHR31503:SF11	EnsemblPlantsGene:SORBI_3006G245100	TIGRFAMs:TIGR00378	TIGRFAMs:TIGR00846
TMHMM:TMhelix	UniParc:UPI00081AD2DB	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:58476028..58479580

Molecular Weight (calculated)

45047.6 Da

IEP (calculated)

5.581

GRAVY (calculated)

0.588

Length

414 amino acids

Sequence
(BLAST)

001: METPQIEMGG FKVNSPQVPN GGLRPTVSSS WNSRGTVERA IKSIRIVVFT SKLNVLMPFG PASIILHFTT RRHGLVFLFS MLGITPLAER LGYATEQLAI
101: YTGPTVGGLL NATFGNATEM IIAIYALKNG MIRVVQQSLL GSILSNMLLV MGCAFFAGGI VHRNKDQVFS KATAVVNSGL LLMAVMGLMF PAVLHFTHSE
201: VRQGASEVAL SRFSSCIMLV AYASYLYFQL SGRSNMYSPI GSEETPNEDT VEEDEEAEIG MWEAVTWLAV LTLWVSFLSE YLVNAIEGAS DSLNLPVAFI
301: SVILLPIVGN AAEHASAIMF AMKDKLDITL GVAIGSSTQI SMFVIPFCVV IGWMMGHKMD LNFQLFETAT LFITVLVVAF MLQDGTANYL KGLMLILCYL
401: IVAASFFVHV DPQS

Best Arabidopsis Sequence Match ( AT3G13320.1 )
(BLAST)

001: MSCCKVPVLI EAQVEMVSAN ELENKSLFRQ EEDATQTKEA SLMEQGSLST SFPQHTPKAP KNSVLNSIKI VIFCNKLNLL LPFGPLAILV HYMIDSKGWV
101: FLLTLVGITP LAERLGYATE QLACYTGPTV GGLLNATFGN VTELIISIFA LKNGMIRVVQ LTLLGSILSN MLLVLGCAFF CGGLVFYQKD QVFDKGIATV
201: NSGLLLMAVM GILFPAVLHY THSEVHAGSS ELALSRFSSC IMLIAYAAYL FFQLKSQSNS YSPLDEESNQ NEETSAEDED PEISKWEAII WLSILTAWVS
301: LLSGYLVDAI EGASVSWNIP IAFISTILLP IVGNAAEHAG AIMFAMKDKL DLSLGVAIGS SIQISMFAVP FCVVIGWMMG QQMDLNFQLF ETAMLFITVI
401: VVAFFLQEGS SNYFKGLMLI LCYLIVAASF FVHEDPHQDG I

Arabidopsis Description

CAX2Vacuolar cation/proton exchanger 2 [Source:UniProtKB/Swiss-Prot;Acc:Q39254]
SUBAcon: [golgi,peroxisome,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.