Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 1
- nucleus 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
26579155
|
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G392100.1 | Wheat | mitochondrion, nucleus | 100.0 | 100.0 |
| TraesCS5B01G387100.1 | Wheat | mitochondrion, nucleus | 100.0 | 100.0 |
| TraesCS5A01G057100.1 | Wheat | cytosol | 5.11 | 4.24 |
| TraesCS5A01G057200.1 | Wheat | cytosol | 4.38 | 3.68 |
| TraesCS5A01G382800.2 | Wheat | plastid | 4.38 | 3.21 |
| TraesCS1A01G308700.1 | Wheat | cytosol | 2.19 | 1.97 |
| TraesCS3A01G184500.1 | Wheat | cytosol | 1.46 | 1.22 |
| TraesCS1A01G416100.1 | Wheat | cytosol | 1.46 | 1.16 |
| TraesCS3A01G335000.1 | Wheat | cytosol | 1.46 | 1.1 |
| TraesCS3A01G216300.1 | Wheat | cytosol | 1.46 | 0.78 |
| TraesCS5B01G387200.1 | Wheat | cytosol | 0.73 | 0.65 |
| TraesCS5D01G392200.1 | Wheat | cytosol | 0.73 | 0.65 |
| TraesCS5A01G139700.1 | Wheat | cytosol | 0.73 | 0.56 |
| TraesCS1A01G193700.1 | Wheat | cytosol | 0.73 | 0.52 |
| TraesCS3A01G191900.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS2A01G166500.1 | Wheat | cytosol, mitochondrion | 0.0 | 0.0 |
| TraesCS1A01G308800.1 | Wheat | cytosol | 0.0 | 0.0 |
| TraesCS7A01G316100.1 | Wheat | cytosol, unclear | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS |
| InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | ScanProsite:PS00046 | PANTHER:PTHR23430 |
| PANTHER:PTHR23430:SF105 | SMART:SM00414 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS5A01G382700 | EnsemblPlants:TraesCS5A01G382700.1 | TIGR:cd00074 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:580794359..580798445
Molecular Weight (calculated)
14487.7 Da
IEP (calculated)
11.120
GRAVY (calculated)
-0.347
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGGKGLL AAKTTAAKTA EKDKGKKAPI SRSSRAGLQF PVGRIHRQLK QRTQANGRVG ATAAVYSAAI LEYLTAEVLE LAGNASKDLK VKRITPRHLQ
101: LAIRGDEELD TLIKGTIAGG GVIPHIHKSL INKSSKE
101: LAIRGDEELD TLIKGTIAGG GVIPHIHKSL INKSSKE
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.