Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G330600.1 | Wheat | cytosol | 96.17 | 95.76 |
| TraesCS1A01G328100.1 | Wheat | cytosol | 96.6 | 93.42 |
| HORVU1Hr1G077760.1 | Barley | cytosol | 87.23 | 89.13 |
| Os05t0510100-01 | Rice | cytosol | 77.87 | 77.22 |
| EES18481 | Sorghum | cytosol | 76.6 | 74.69 |
| Zm00001d000310_P001 | Maize | cytosol | 77.45 | 74.59 |
| TraesCS3B01G340800.1 | Wheat | cytosol | 61.7 | 65.91 |
| GSMUA_Achr3P13680_001 | Banana | cytosol | 28.94 | 51.91 |
| PGSC0003DMT400001705 | Potato | cytosol | 42.55 | 47.39 |
| Solyc03g116710.2.1 | Tomato | cytosol | 41.7 | 46.45 |
| VIT_09s0002g06920.t01 | Wine grape | cytosol | 40.85 | 46.38 |
| AT1G80120.1 | Thale cress | cytosol | 39.57 | 44.29 |
| CDY37567 | Canola | cytosol | 39.15 | 43.81 |
| CDY41119 | Canola | cytosol | 39.15 | 43.81 |
| Bra008497.1-P | Field mustard | cytosol | 39.15 | 43.81 |
| KRH44464 | Soybean | cytosol | 40.43 | 43.38 |
| CDY58464 | Canola | cytosol | 39.15 | 43.19 |
| KRH47444 | Soybean | cytosol | 40.0 | 42.92 |
| Bra001606.1-P | Field mustard | cytosol | 38.72 | 42.72 |
| CDY30113 | Canola | cytosol | 39.57 | 42.47 |
| CDX75845 | Canola | cytosol | 38.3 | 42.25 |
| Bra027206.1-P | Field mustard | cytosol | 39.15 | 42.01 |
| KRH09722 | Soybean | cytosol | 38.72 | 41.55 |
| KRH23583 | Soybean | cytosol | 38.3 | 40.91 |
| AT3G15810.1 | Thale cress | cytosol | 37.87 | 40.45 |
| CDX87294 | Canola | cytosol | 39.15 | 35.8 |
| Bra035195.1-P | Field mustard | cytosol | 31.49 | 35.24 |
| TraesCS4B01G123400.1 | Wheat | cytosol | 30.64 | 29.51 |
| TraesCS4B01G396800.1 | Wheat | plastid | 25.96 | 28.77 |
| TraesCS1B01G314000.1 | Wheat | extracellular, plasma membrane | 25.11 | 28.37 |
| TraesCS5B01G144000.1 | Wheat | cytosol | 27.23 | 28.07 |
| TraesCS3B01G487200.1 | Wheat | cytosol | 22.55 | 27.04 |
| TraesCS3B01G372300.1 | Wheat | cytosol, peroxisome, plastid | 22.98 | 26.6 |
| TraesCS3B01G486300.1 | Wheat | plastid | 21.7 | 26.02 |
| TraesCS3B01G372600.1 | Wheat | cytosol, extracellular, peroxisome | 22.55 | 25.85 |
| TraesCS3B01G372400.1 | Wheat | plastid | 22.55 | 25.73 |
| TraesCS3B01G486200.1 | Wheat | plastid | 20.85 | 24.62 |
| TraesCS3B01G487000.1 | Wheat | plastid | 20.43 | 24.49 |
| TraesCS2B01G132800.1 | Wheat | plastid | 21.7 | 23.83 |
| TraesCS5B01G143700.1 | Wheat | plastid | 26.38 | 23.48 |
| TraesCS3B01G486900.1 | Wheat | cytosol, plastid | 19.57 | 23.47 |
| TraesCS5B01G143600.1 | Wheat | mitochondrion | 24.26 | 22.98 |
| TraesCS3B01G486600.1 | Wheat | cytosol | 18.3 | 21.83 |
| TraesCS3B01G486800.1 | Wheat | plastid | 20.43 | 21.24 |
| TraesCS3B01G487100.1 | Wheat | plastid | 18.3 | 20.57 |
| TraesCS4B01G155500.1 | Wheat | cytosol, mitochondrion | 17.02 | 16.0 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G341900.1 | EnsemblPlantsGene:TraesCS1B01G341900 | Gene3D:3.20.90.20 | InterPro:IPR025659 | InterPro:IPR038595 | InterPro:LOR |
| InterPro:LOR_sf | InterPro:Tubby-like_C | PANTHER:PTHR31087 | PANTHER:PTHR31087:SF8 | PFAM:PF04525 | SEG:seg |
| SUPFAM:SSF54518 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:570023285..570023992
Molecular Weight (calculated)
24629.4 Da
IEP (calculated)
5.027
GRAVY (calculated)
0.056
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGEEAPPAT VVVGEEHCEM EDRELTVRKT TLFSPGDGLE AYDHRTGELA FRLETYGRGG ACGGGAAAGD LALLGAAGDP VLTVRRRRPS LHHRWDGFLG
101: DGGAAGAKPL FSARRSSILG AGAGVLVDLL APAHAAAKEF RVDGSFPRRC CRVVAVASSV GGEVEDQETV VAEVRRKVDE GAHVVLGRDV FVLWVRAGFD
201: AAFAMGIVLV LGRITGDELD GVLGEELLLE ATSPV
101: DGGAAGAKPL FSARRSSILG AGAGVLVDLL APAHAAAKEF RVDGSFPRRC CRVVAVASSV GGEVEDQETV VAEVRRKVDE GAHVVLGRDV FVLWVRAGFD
201: AAFAMGIVLV LGRITGDELD GVLGEELLLE ATSPV
001: MELVEETIPK EGKKMGERIV VDKAYLYQED KPLTVCKTSL FYTGDGFAAY DCRGDIIFRV DSYGPDTRDN DEIVLMDATG KCLLTVKRKR PTLHQRWEGF
101: LGERSEGQKP IFSVRRSSII GRCTMEVEVY DGTGEEYIID GDFSQRSCLI YDTKKCTVAE IKRKVDASTN VMLGRDVFTL EIKPGFDGAF AMGLVVVLDQ
201: INGDDPVEIG DEQVHPFVED
101: LGERSEGQKP IFSVRRSSII GRCTMEVEVY DGTGEEYIID GDFSQRSCLI YDTKKCTVAE IKRKVDASTN VMLGRDVFTL EIKPGFDGAF AMGLVVVLDQ
201: INGDDPVEIG DEQVHPFVED
Arabidopsis Description
Protein LURP-one-related 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVZ8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.