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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra001606.1-P Field mustard cytosol 90.45 93.43
CDX75845 Canola cytosol 90.45 93.43
CDY58464 Canola cytosol 89.55 92.49
CDY30113 Canola cytosol 90.45 90.87
Bra027206.1-P Field mustard cytosol 89.55 89.95
AT1G80120.1 Thale cress cytosol 60.45 63.33
Solyc03g116710.2.1 Tomato cytosol 57.73 60.19
PGSC0003DMT400001705 Potato cytosol 57.73 60.19
GSMUA_Achr3P13680_001 Banana cytosol 29.55 49.62
HORVU3Hr1G075150.1 Barley cytosol 44.55 44.75
TraesCS3B01G340800.1 Wheat cytosol 44.55 44.55
TraesCS3A01G296300.1 Wheat cytosol 44.55 44.55
TraesCS3D01G306600.1 Wheat cytosol 44.09 44.29
Zm00001d043318_P001 Maize cytosol 43.64 43.05
EES03690 Sorghum cytosol 43.64 43.05
Os01t0771000-01 Rice cytosol 43.64 42.29
HORVU1Hr1G077760.1 Barley cytosol 42.27 40.43
Zm00001d000310_P001 Maize cytosol 42.27 38.11
TraesCS1B01G341900.1 Wheat cytosol 40.45 37.87
EES18481 Sorghum cytosol 41.36 37.76
TraesCS1D01G330600.1 Wheat cytosol 40.45 37.71
Os05t0510100-01 Rice cytosol 40.45 37.55
TraesCS1A01G328100.1 Wheat cytosol 40.45 36.63
AT2G38640.1 Thale cress cytosol 31.36 35.2
AT5G41590.1 Thale cress cytosol 30.45 30.32
AT1G63410.2 Thale cress cytosol 24.09 24.65
AT1G53870.3 Thale cress cytosol, nucleus, peroxisome 22.27 22.58
AT1G53875.1 Thale cress cytosol, mitochondrion, nucleus, peroxisome 22.27 21.49
AT3G14260.1 Thale cress cytosol 21.82 20.87
AT1G53890.3 Thale cress cytosol 20.45 18.52
Protein Annotations
Gene3D:3.20.90.20MapMan:35.1EntrezGene:820824UniProt:A0A178VJY6ProteinID:AEE75729.1ArrayExpress:AT3G15810
EnsemblPlantsGene:AT3G15810RefSeq:AT3G15810TAIR:AT3G15810RefSeq:AT3G15810-TAIR-GEnsemblPlants:AT3G15810.1TAIR:AT3G15810.1
EMBL:AY063868EMBL:AY086466EMBL:AY091222Unigene:At.27403ProteinID:BAB02312.1InterPro:IPR025659
InterPro:IPR038595InterPro:LORInterPro:LOR_sfRefSeq:NP_566526.1ProteinID:OAP06146.1PFAM:PF04525
PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078
PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052
PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281
PANTHER:PTHR31087PANTHER:PTHR31087:SF2UniProt:Q9LVZ8SUPFAM:SSF54518InterPro:Tubby-like_CUniParc:UPI000009E41D
Description
Protein LURP-one-related 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVZ8]
Coordinates
chr3:-:5347762..5349321
Molecular Weight (calculated)
24818.6 Da
IEP (calculated)
4.495
GRAVY (calculated)
-0.357
Length
220 amino acids
Sequence
(BLAST)
001: MELVEETIPK EGKKMGERIV VDKAYLYQED KPLTVCKTSL FYTGDGFAAY DCRGDIIFRV DSYGPDTRDN DEIVLMDATG KCLLTVKRKR PTLHQRWEGF
101: LGERSEGQKP IFSVRRSSII GRCTMEVEVY DGTGEEYIID GDFSQRSCLI YDTKKCTVAE IKRKVDASTN VMLGRDVFTL EIKPGFDGAF AMGLVVVLDQ
201: INGDDPVEIG DEQVHPFVED
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.