Factsheet for PGSC0003DMT400001705

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g116710.2.1	Tomato	cytosol	95.73	95.73
Bra001606.1-P	Field mustard	cytosol	59.24	58.69
CDX75845	Canola	cytosol	58.77	58.22
CDY58464	Canola	cytosol	58.77	58.22
AT3G15810.1	Thale cress	cytosol	60.19	57.73
CDY30113	Canola	cytosol	59.72	57.53
Bra027206.1-P	Field mustard	cytosol	58.29	56.16
GSMUA_Achr3P13680_001	Banana	cytosol	33.18	53.44
TraesCS3B01G340800.1	Wheat	cytosol	49.29	47.27
TraesCS3A01G296300.1	Wheat	cytosol	49.29	47.27
TraesCS3D01G306600.1	Wheat	cytosol	48.82	47.03
HORVU3Hr1G075150.1	Barley	cytosol	48.82	47.03
Os01t0771000-01	Rice	cytosol	49.29	45.81
Zm00001d043318_P001	Maize	cytosol	47.39	44.84
EES03690	Sorghum	cytosol	47.39	44.84
Os05t0510100-01	Rice	cytosol	47.87	42.62
HORVU1Hr1G077760.1	Barley	cytosol	46.45	42.61
TraesCS1B01G341900.1	Wheat	cytosol	47.39	42.55
TraesCS1D01G330600.1	Wheat	cytosol	47.39	42.37
EES18481	Sorghum	cytosol	47.39	41.49
TraesCS1A01G328100.1	Wheat	cytosol	47.39	41.15
Zm00001d000310_P001	Maize	cytosol	47.39	40.98
PGSC0003DMT400031740	Potato	plastid	35.55	31.91
PGSC0003DMT400030793	Potato	cytosol	29.86	29.58
PGSC0003DMT400032165	Potato	cytosol	23.7	28.9
PGSC0003DMT400007876	Potato	plastid	26.07	27.36
PGSC0003DMT400032166	Potato	plastid	25.12	25.0
PGSC0003DMT400012847	Potato	cytosol	14.69	23.48
PGSC0003DMT400010898	Potato	cytosol	13.74	22.83
PGSC0003DMT400014913	Potato	plastid	22.27	22.6

Protein Annotations

EnsemblPlants:PGSC0003DMT400001705	EnsemblPlantsGene:PGSC0003DMG400000637	EntrezGene:102601120	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595
InterPro:LOR	InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF2	PFAM:PF04525
PGSC:PGSC0003DMG400000637	RefSeq:XP_006364218.1	SEG:seg	SUPFAM:SSF54518	UniParc:UPI000296F94C	UniProt:M0ZIY6
MapMan:35.1	:	:	:	:	:

Description

GTP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000637]

Coordinates

chr3:-:56486492..56487506

Molecular Weight (calculated)

23596.8 Da

IEP (calculated)

4.968

GRAVY (calculated)

-0.253

Length

211 amino acids

Sequence
(BLAST)

001: MKSKVVVEDT FVHSEETNLT VRKTSLFFTG DGFTAYDCKG QLVFRVDTYG PDSRDLGELV LMDATGRCLL TVRRKRPSLH NRWEGYLGEG EEGKKPIFSV
101: RRSSIIGRSN VTVEVYSNPT EEYQIEGSFA QRNCTFFNAD KVSVAEIRRK VDACAHVVLG KDVFSLSIKP GFDSAFAMGL VLVLDQIQVD DFSDNRVDAD
201: PIISDDLNFS S

Best Arabidopsis Sequence Match ( AT3G15810.1 )
(BLAST)

001: MELVEETIPK EGKKMGERIV VDKAYLYQED KPLTVCKTSL FYTGDGFAAY DCRGDIIFRV DSYGPDTRDN DEIVLMDATG KCLLTVKRKR PTLHQRWEGF
101: LGERSEGQKP IFSVRRSSII GRCTMEVEVY DGTGEEYIID GDFSQRSCLI YDTKKCTVAE IKRKVDASTN VMLGRDVFTL EIKPGFDGAF AMGLVVVLDQ
201: INGDDPVEIG DEQVHPFVED

Arabidopsis Description

Protein LURP-one-related 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.