Factsheet for PGSC0003DMT400032166

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080770.2.1	Tomato	plastid	91.04	91.04
PGSC0003DMT400032165	Potato	cytosol	73.58	90.17
PGSC0003DMT400010898	Potato	cytosol	34.43	57.48
VIT_02s0025g03730.t01	Wine grape	cytosol	52.83	55.45
PGSC0003DMT400007876	Potato	plastid	52.36	55.22
VIT_02s0025g03740.t01	Wine grape	plastid	51.89	53.4
VIT_02s0025g03750.t01	Wine grape	cytosol	51.89	52.38
PGSC0003DMT400014913	Potato	plastid	46.7	47.6
PGSC0003DMT400012847	Potato	cytosol	29.25	46.97
KRH27952	Soybean	cytosol	42.45	46.63
KRH77515	Soybean	cytosol	41.51	45.36
KRH59852	Soybean	cytosol	41.51	44.9
KRH41152	Soybean	cytosol	29.25	41.61
Bra027804.1-P	Field mustard	cytosol	36.79	40.84
CDY49893	Canola	cytosol	36.79	40.84
TraesCS2A01G113800.1	Wheat	plastid	40.09	40.67
HORVU2Hr1G019720.1	Barley	plastid	39.62	40.19
TraesCS2B01G132800.1	Wheat	plastid	40.09	39.72
TraesCS2D01G114400.1	Wheat	plastid	40.09	39.35
EER99890	Sorghum	plastid	37.26	38.92
CDY45367	Canola	cytosol	27.36	37.66
AT1G63410.2	Thale cress	cytosol	37.74	37.21
Os07t0672600-00	Rice	plastid	39.62	36.68
TraesCS4A01G142700.1	Wheat	mitochondrion, plastid	38.21	33.33
HORVU6Hr1G081400.1	Barley	mitochondrion	39.15	32.81
TraesCS4B01G155500.1	Wheat	cytosol, mitochondrion	38.21	32.4
Zm00001d029119_P001	Maize	mitochondrion	37.74	32.39
TraesCS4D01G168500.1	Wheat	mitochondrion	38.68	31.78
KXG39402	Sorghum	mitochondrion	38.21	31.4
PGSC0003DMT400001705	Potato	cytosol	25.0	25.12
PGSC0003DMT400031740	Potato	plastid	25.94	23.4
PGSC0003DMT400030793	Potato	cytosol	19.34	19.25
GSMUA_Achr3P24000_001	Banana	nucleus	44.34	11.38

Protein Annotations

EnsemblPlants:PGSC0003DMT400032166	EnsemblPlantsGene:PGSC0003DMG402012350	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595	InterPro:LOR
InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF25	PFAM:PF04525	PGSC:PGSC0003DMG402012350
SEG:seg	SUPFAM:SSF54518	UniParc:UPI000296B533	UniProt:M1AX03	MapMan:35.1	:

Description

GTP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG402012350]

Coordinates

chr8:+:54545670..54546881

Molecular Weight (calculated)

24066.0 Da

IEP (calculated)

9.903

GRAVY (calculated)

-0.184

Length

212 amino acids

Sequence
(BLAST)

001: MAKVHPNKSN YLSTTSSSSS FSSISSNFYV SPRRETFTLW MKSLVYHGNG CTVYDSNGKI VYRIDNYNIK RSKQVHLMDS NGKVLFSIRN RKVPVFGHWD
101: GYKWSYDGVT SKEIPWFQVK KIHNVLREVN VNYYNVILGC NSEASCYNII LTTKSIKIVN QHGRLVAEVK QKQASSGVLF GDDVLTLVVE PHVDQSLIMA
201: LVTVCGLIHH KI

Best Arabidopsis Sequence Match ( AT3G14260.1 )
(BLAST)

001: MQIYRRPFET KTWQYRICPA ETMVKIHPDL TTSGAGEETS SPYLTTEQES FTIWMKSLVF NTNGCTVFDS KGNIIYRVDN YNSKSCREVY LMDLSGHVLF
101: TLRRQKFGLF KTWEGYRSSS ATVESTTKLE YFRVKNNVFQ VPNKDSSSSY RVNAGSCRND EQYCYKMVTR GSSLAIEDNC GKLLAEVKRK QSINGLKLGD
201: DVLTMMVESQ VDHSFIIGLV LAHSLINCIL

Arabidopsis Description

Protein LURP-one-related 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.