Factsheet for VIT_02s0025g03750.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g03740.t01	Wine grape	plastid	82.86	84.47
VIT_02s0025g03730.t01	Wine grape	cytosol	80.95	84.16
PGSC0003DMT400032165	Potato	cytosol	48.1	58.38
Solyc08g080760.1.1	Tomato	mitochondrion	51.9	54.77
PGSC0003DMT400007876	Potato	plastid	51.43	53.73
Solyc08g080750.2.1	Tomato	plastid	50.48	52.48
Solyc08g080770.2.1	Tomato	plastid	52.86	52.36
Solyc12g056310.1.1	Tomato	plastid	49.05	52.28
PGSC0003DMT400010898	Potato	cytosol	31.43	51.97
PGSC0003DMT400032166	Potato	plastid	52.38	51.89
PGSC0003DMT400014913	Potato	plastid	48.57	49.04
KRH59852	Soybean	cytosol	45.24	48.47
Solyc08g007980.2.1	Tomato	plastid	47.62	48.08
PGSC0003DMT400012847	Potato	cytosol	30.0	47.73
KRH27952	Soybean	cytosol	43.33	47.15
KRH77515	Soybean	cytosol	43.33	46.91
KRH41152	Soybean	cytosol	32.86	46.31
CDY49893	Canola	cytosol	41.9	46.07
Bra027804.1-P	Field mustard	cytosol	41.43	45.55
EER99890	Sorghum	plastid	42.86	44.34
HORVU2Hr1G019720.1	Barley	plastid	43.81	44.02
TraesCS2A01G113800.1	Wheat	plastid	43.81	44.02
TraesCS2B01G132800.1	Wheat	plastid	44.76	43.93
TraesCS2D01G114400.1	Wheat	plastid	44.29	43.06
CDY45367	Canola	cytosol	30.95	42.21
AT1G63410.2	Thale cress	cytosol	42.38	41.4
Os07t0672600-00	Rice	plastid	42.86	39.3
TraesCS4A01G142700.1	Wheat	mitochondrion, plastid	43.33	37.45
TraesCS4B01G155500.1	Wheat	cytosol, mitochondrion	43.33	36.4
HORVU6Hr1G081400.1	Barley	mitochondrion	43.33	35.97
TraesCS4D01G168500.1	Wheat	mitochondrion	43.81	35.66
Zm00001d029119_P001	Maize	mitochondrion	41.43	35.22
KXG39402	Sorghum	mitochondrion	41.43	33.72
VIT_08s0032g00760.t01	Wine grape	cytosol	30.0	31.5
VIT_08s0056g00180.t01	Wine grape	cytosol	31.43	30.56
VIT_02s0025g00500.t01	Wine grape	cytosol	28.57	27.27
VIT_09s0002g06920.t01	Wine grape	cytosol	25.71	26.09
VIT_08s0056g00130.t01	Wine grape	cytosol	27.62	24.37
GSMUA_Achr3P24000_001	Banana	nucleus	49.05	12.47

Protein Annotations

EntrezGene:100256427	wikigene:100256427	Gene3D:3.20.90.20	MapMan:35.1	ProteinID:CBI34692	ProteinID:CBI34692.3
UniProt:D7TW17	EMBL:FN596251	InterPro:IPR025659	InterPro:IPR038595	EntrezGene:LOC100256427	wikigene:LOC100256427
InterPro:LOR	InterPro:LOR_sf	PFAM:PF04525	PANTHER:PTHR31087	PANTHER:PTHR31087:SF30	SUPFAM:SSF54518
InterPro:Tubby-like_C	UniParc:UPI0001BE429A	ArrayExpress:VIT_02s0025g03750	EnsemblPlantsGene:VIT_02s0025g03750	EnsemblPlants:VIT_02s0025g03750.t01	RefSeq:XP_002269437
RefSeq:XP_002269437.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:3248584..3249814

Molecular Weight (calculated)

23293.1 Da

IEP (calculated)

9.049

GRAVY (calculated)

-0.153

Length

210 amino acids

Sequence
(BLAST)

001: MAKVHPQTFT AAPLSPPSDS CITSKREAFT IWMKSLVIQG NGCTVFNSDG EIVYRIDNYD KKCSSEVYLM DLQGKVLFTI LQRKLRVFGR WEGYKSNGSK
101: GNNQKPWFQV RKNCRILGGG SSCQVTVRPN EAQSYCYRIQ GLTGKSAFKI VDSQGGLLAE VEQKQTSSGV VLGEDVLNLV VEPHVDHSLV MALVAVYGLI
201: HHRINFSCLA

Best Arabidopsis Sequence Match ( AT1G53875.1 )
(BLAST)

001: MQIYSNNRTM RTKFSLNLIS PAKNMVKIHP DKAFPVDFSV GEGKTSPYLT TEKESFTIWM RSLVFHSKGC TVFDSKGNLI YRVDNYNSKS CSEVYLMDLY
101: GKILFTLRQK KLGLFKSWKG YNSTGTRFQL RKNFKILPKG SSSSYKVVMG SRIVDGDHQS CYKIVKRKSV FTIEDGSGRL LAEVKKKQSN IKSLDLGKDV
201: LTMMVEPQVD HSLIMGIVIA YSLLKCKL

Arabidopsis Description

LURP-one-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8AWJ7]
SUBAcon: [mitochondrion,peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.