Factsheet for PGSC0003DMT400032165

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080760.1.1	Tomato	mitochondrion	91.91	79.9
PGSC0003DMT400032166	Potato	plastid	90.17	73.58
PGSC0003DMT400010898	Potato	cytosol	42.2	57.48
VIT_02s0025g03730.t01	Wine grape	cytosol	57.23	49.01
VIT_02s0025g03750.t01	Wine grape	cytosol	58.38	48.1
VIT_02s0025g03740.t01	Wine grape	plastid	57.23	48.06
PGSC0003DMT400012847	Potato	cytosol	34.68	45.45
PGSC0003DMT400007876	Potato	plastid	52.6	45.27
KRH27952	Soybean	cytosol	45.09	40.41
KRH59852	Soybean	cytosol	45.09	39.8
KRH77515	Soybean	cytosol	44.51	39.69
PGSC0003DMT400014913	Potato	plastid	45.09	37.5
Bra027804.1-P	Field mustard	cytosol	39.88	36.13
CDY49893	Canola	cytosol	39.88	36.13
EER99890	Sorghum	plastid	41.04	34.98
KRH41152	Soybean	cytosol	30.06	34.9
TraesCS2A01G113800.1	Wheat	plastid	41.62	34.45
TraesCS2B01G132800.1	Wheat	plastid	42.2	34.11
HORVU2Hr1G019720.1	Barley	plastid	41.04	33.97
TraesCS2D01G114400.1	Wheat	plastid	41.62	33.33
Os07t0672600-00	Rice	plastid	43.35	32.75
AT1G63410.2	Thale cress	cytosol	39.88	32.09
CDY45367	Canola	cytosol	27.75	31.17
TraesCS4A01G142700.1	Wheat	mitochondrion, plastid	40.46	28.81
Zm00001d029119_P001	Maize	mitochondrion	41.04	28.74
HORVU6Hr1G081400.1	Barley	mitochondrion	41.04	28.06
KXG39402	Sorghum	mitochondrion	41.62	27.91
TraesCS4B01G155500.1	Wheat	cytosol, mitochondrion	39.88	27.6
TraesCS4D01G168500.1	Wheat	mitochondrion	41.04	27.52
PGSC0003DMT400001705	Potato	cytosol	28.9	23.7
PGSC0003DMT400031740	Potato	plastid	30.64	22.55
PGSC0003DMT400030793	Potato	cytosol	23.7	19.25
GSMUA_Achr3P24000_001	Banana	nucleus	45.09	9.44

Protein Annotations

EnsemblPlants:PGSC0003DMT400032165	EnsemblPlantsGene:PGSC0003DMG401012350	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595	InterPro:LOR
InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF25	PFAM:PF04525	PGSC:PGSC0003DMG401012350
SUPFAM:SSF54518	UniParc:UPI0002969F99	UniProt:M1AX02	MapMan:35.1	:	:

Description

GTP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401012350]

Coordinates

chr8:+:54539579..54540312

Molecular Weight (calculated)

19554.8 Da

IEP (calculated)

8.918

GRAVY (calculated)

-0.073

Length

173 amino acids

Sequence
(BLAST)

001: MKSLVYHGNG CTVYDSNGQI VYRIDNYNIK RSKEVHLMDC NGKVLFSIRN RKVPVIGHWD GYKWSYEGMS SKEIPWFQVK KIHNVLRGDK VNYYNVILGC
101: NSEASCYNII ILATKSIKIV DQHGGLVAEV KQKQASSGVL FGDDVLTLMV EPHVDQSLVM ALVTVCGLIH HRI

Best Arabidopsis Sequence Match ( AT3G14260.1 )
(BLAST)

001: MQIYRRPFET KTWQYRICPA ETMVKIHPDL TTSGAGEETS SPYLTTEQES FTIWMKSLVF NTNGCTVFDS KGNIIYRVDN YNSKSCREVY LMDLSGHVLF
101: TLRRQKFGLF KTWEGYRSSS ATVESTTKLE YFRVKNNVFQ VPNKDSSSSY RVNAGSCRND EQYCYKMVTR GSSLAIEDNC GKLLAEVKRK QSINGLKLGD
201: DVLTMMVESQ VDHSFIIGLV LAHSLINCIL

Arabidopsis Description

Protein LURP-one-related 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUM1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.