Factsheet for PGSC0003DMT400012847

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007876	Potato	plastid	72.73	47.76
PGSC0003DMT400010898	Potato	cytosol	41.67	43.31
PGSC0003DMT400014913	Potato	plastid	62.12	39.42
PGSC0003DMT400032165	Potato	cytosol	45.45	34.68
KRH27952	Soybean	cytosol	44.7	30.57
VIT_02s0025g03730.t01	Wine grape	cytosol	46.21	30.2
VIT_02s0025g03750.t01	Wine grape	cytosol	47.73	30.0
KRH77515	Soybean	cytosol	43.18	29.38
PGSC0003DMT400032166	Potato	plastid	46.97	29.25
VIT_02s0025g03740.t01	Wine grape	plastid	45.45	29.13
Bra027804.1-P	Field mustard	cytosol	40.91	28.27
CDY49893	Canola	cytosol	40.15	27.75
KRH59852	Soybean	cytosol	40.91	27.55
AT1G63410.2	Thale cress	cytosol	41.67	25.58
EER99890	Sorghum	plastid	34.09	22.17
CDY45367	Canola	cytosol	25.0	21.43
KRH41152	Soybean	cytosol	23.48	20.81
TraesCS2A01G113800.1	Wheat	plastid	32.58	20.57
TraesCS2B01G132800.1	Wheat	plastid	33.33	20.56
HORVU2Hr1G019720.1	Barley	plastid	31.82	20.1
Os07t0672600-00	Rice	plastid	34.85	20.09
TraesCS2D01G114400.1	Wheat	plastid	32.58	19.91
Zm00001d029119_P001	Maize	mitochondrion	37.12	19.84
KXG39402	Sorghum	mitochondrion	37.12	18.99
TraesCS4A01G142700.1	Wheat	mitochondrion, plastid	33.33	18.11
TraesCS4B01G155500.1	Wheat	cytosol, mitochondrion	33.33	17.6
HORVU6Hr1G081400.1	Barley	mitochondrion	33.33	17.39
TraesCS4D01G168500.1	Wheat	mitochondrion	33.33	17.05
PGSC0003DMT400001705	Potato	cytosol	23.48	14.69
PGSC0003DMT400031740	Potato	plastid	23.48	13.19
PGSC0003DMT400030793	Potato	cytosol	21.21	13.15
GSMUA_Achr3P24000_001	Banana	nucleus	34.85	5.57

Protein Annotations

EnsemblPlants:PGSC0003DMT400012847	EnsemblPlantsGene:PGSC0003DMG400005002	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595	InterPro:LOR
InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF25	PFAM:PF04525	PGSC:PGSC0003DMG400005002
SUPFAM:SSF54518	UniParc:UPI0002955BA2	UniProt:M1A1W1	MapMan:35.1	:	:

Description

GTP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005002]

Coordinates

chr12:+:54077723..54078894

Molecular Weight (calculated)

14931.1 Da

IEP (calculated)

10.002

GRAVY (calculated)

-0.233

Length

132 amino acids

Sequence
(BLAST)

001: MDLSGQVLFF IKKERLRLLG RWSGYLSGGF KGKPWFQVRR NWKYSKGDVI CDVNLGCDKS IGSCYKIQQI DKKSSFQISN NTGQLVAKVN QKQSSRGFGY
101: GDDVLTLEVE PQVDYSFIVA LVTICGLIKH KL

Best Arabidopsis Sequence Match ( AT1G63410.1 )
(BLAST)

001: MARVFPQAAI SSPYMSTERE TFTVWMKSLV YQTNGLTVYN SNGEITYRVE NYDKCSNEVH IMDLHGNILF TIRKKKLWLF GSWYVYRECG SFTSTEEVKP
101: CARIKRSSIR DGDWEVRDET NEVFWILRFD PKFAFQIIDI HGNIIAQVKP KQSSNGITLG EDVLTLEVKP RVDHSLVVTL VTVYGLIKGV V

Arabidopsis Description

Protein LURP-one-related 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH27]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.