Factsheet for PGSC0003DMT400010898

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g056310.1.1	Tomato	plastid	92.13	59.39
PGSC0003DMT400032165	Potato	cytosol	57.48	42.2
PGSC0003DMT400012847	Potato	cytosol	43.31	41.67
PGSC0003DMT400032166	Potato	plastid	57.48	34.43
VIT_02s0025g03730.t01	Wine grape	cytosol	53.54	33.66
VIT_02s0025g03740.t01	Wine grape	plastid	52.76	32.52
VIT_02s0025g03750.t01	Wine grape	cytosol	51.97	31.43
PGSC0003DMT400007876	Potato	plastid	48.03	30.35
Bra027804.1-P	Field mustard	cytosol	44.88	29.84
CDY49893	Canola	cytosol	44.88	29.84
KRH27952	Soybean	cytosol	44.09	29.02
KRH77515	Soybean	cytosol	43.31	28.35
AT1G63410.2	Thale cress	cytosol	44.09	26.05
KRH59852	Soybean	cytosol	40.16	26.02
PGSC0003DMT400014913	Potato	plastid	42.52	25.96
HORVU2Hr1G019720.1	Barley	plastid	37.8	22.97
TraesCS2A01G113800.1	Wheat	plastid	37.8	22.97
TraesCS2D01G114400.1	Wheat	plastid	38.58	22.69
TraesCS2B01G132800.1	Wheat	plastid	37.8	22.43
Os07t0672600-00	Rice	plastid	40.16	22.27
EER99890	Sorghum	plastid	35.43	22.17
CDY45367	Canola	cytosol	25.98	21.43
TraesCS4A01G142700.1	Wheat	mitochondrion, plastid	33.86	17.7
KXG39402	Sorghum	mitochondrion	35.43	17.44
Zm00001d029119_P001	Maize	mitochondrion	33.86	17.41
HORVU6Hr1G081400.1	Barley	mitochondrion	34.65	17.39
TraesCS4D01G168500.1	Wheat	mitochondrion	34.65	17.05
TraesCS4B01G155500.1	Wheat	cytosol, mitochondrion	33.07	16.8
KRH41152	Soybean	cytosol	19.68	16.78
PGSC0003DMT400001705	Potato	cytosol	22.83	13.74
PGSC0003DMT400031740	Potato	plastid	25.2	13.62
PGSC0003DMT400030793	Potato	cytosol	22.83	13.62
GSMUA_Achr3P24000_001	Banana	nucleus	33.86	5.21

Protein Annotations

EnsemblPlants:PGSC0003DMT400010898	EnsemblPlantsGene:PGSC0003DMG400004266	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595	InterPro:LOR
InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF25	PFAM:PF04525	PGSC:PGSC0003DMG400004266
SUPFAM:SSF54518	UniParc:UPI000296DD7C	UniProt:M0ZYQ7	MapMan:35.1	:	:

Description

GTP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004266]

Coordinates

chr12:+:54146435..54147110

Molecular Weight (calculated)

14562.9 Da

IEP (calculated)

9.304

GRAVY (calculated)

0.040

Length

127 amino acids

Sequence
(BLAST)

001: MDLHGAILFS LRKKKLTLFG YWNGYKMDEE TPYFQVKKIG NLFTGDLNYD IIFGCDTYNY RIIALRGKLG FKIINTENRL IAEVKQKQSS SAVKFGDDVL
101: SLVVEPHVDH SLVMALVTVY GLIRHML

Best Arabidopsis Sequence Match ( AT1G63410.1 )
(BLAST)

001: MARVFPQAAI SSPYMSTERE TFTVWMKSLV YQTNGLTVYN SNGEITYRVE NYDKCSNEVH IMDLHGNILF TIRKKKLWLF GSWYVYRECG SFTSTEEVKP
101: CARIKRSSIR DGDWEVRDET NEVFWILRFD PKFAFQIIDI HGNIIAQVKP KQSSNGITLG EDVLTLEVKP RVDHSLVVTL VTVYGLIKGV V

Arabidopsis Description

Protein LURP-one-related 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH27]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.