Factsheet for PGSC0003DMT400007876

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080750.2.1	Tomato	plastid	97.01	96.53
PGSC0003DMT400012847	Potato	cytosol	47.76	72.73
PGSC0003DMT400014913	Potato	plastid	72.14	69.71
VIT_02s0025g03730.t01	Wine grape	cytosol	54.73	54.46
PGSC0003DMT400032165	Potato	cytosol	45.27	52.6
PGSC0003DMT400032166	Potato	plastid	55.22	52.36
VIT_02s0025g03740.t01	Wine grape	plastid	53.23	51.94
VIT_02s0025g03750.t01	Wine grape	cytosol	53.73	51.43
PGSC0003DMT400010898	Potato	cytosol	30.35	48.03
KRH27952	Soybean	cytosol	44.28	46.11
KRH59852	Soybean	cytosol	43.28	44.39
Bra027804.1-P	Field mustard	cytosol	41.79	43.98
CDY49893	Canola	cytosol	41.29	43.46
KRH77515	Soybean	cytosol	41.79	43.3
CDY45367	Canola	cytosol	30.85	40.26
AT1G63410.2	Thale cress	cytosol	42.79	40.0
KRH41152	Soybean	cytosol	29.35	39.6
HORVU2Hr1G019720.1	Barley	plastid	40.8	39.23
TraesCS2A01G113800.1	Wheat	plastid	40.8	39.23
TraesCS2D01G114400.1	Wheat	plastid	40.8	37.96
TraesCS2B01G132800.1	Wheat	plastid	40.3	37.85
EER99890	Sorghum	plastid	37.81	37.44
Os07t0672600-00	Rice	plastid	40.3	35.37
Zm00001d029119_P001	Maize	mitochondrion	41.79	34.01
TraesCS4A01G142700.1	Wheat	mitochondrion, plastid	40.3	33.33
HORVU6Hr1G081400.1	Barley	mitochondrion	40.8	32.41
TraesCS4B01G155500.1	Wheat	cytosol, mitochondrion	40.3	32.4
KXG39402	Sorghum	mitochondrion	41.29	32.17
TraesCS4D01G168500.1	Wheat	mitochondrion	40.8	31.78
PGSC0003DMT400001705	Potato	cytosol	27.36	26.07
PGSC0003DMT400031740	Potato	plastid	26.37	22.55
PGSC0003DMT400030793	Potato	cytosol	20.4	19.25
GSMUA_Achr3P24000_001	Banana	nucleus	43.28	10.53

Protein Annotations

EnsemblPlants:PGSC0003DMT400007876	EnsemblPlantsGene:PGSC0003DMG400003046	EntrezGene:102588735	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595
InterPro:LOR	InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF25	PFAM:PF04525
PGSC:PGSC0003DMG400003046	RefSeq:XP_006358899.1	SEG:seg	SUPFAM:SSF54518	UniParc:UPI000295446E	UniProt:M0ZTN6
MapMan:35.1	:	:	:	:	:

Description

GTP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003046]

Coordinates

chr8:+:54453589..54454832

Molecular Weight (calculated)

22656.3 Da

IEP (calculated)

9.148

GRAVY (calculated)

-0.297

Length

201 amino acids

Sequence
(BLAST)

001: MGKIHPENIS SPSSSSCSSP YVTSNRETFT IWMKSLVFHG NGCTVFNSKG ELCFRVDNYQ ERCSNEVFLM DLNGQVLFSI KKEKLRVFGR WNGYLCGGFK
101: GRPWFQVRKN CTFSRGNVIC NVNLGNEKSI ESCYKIQKLD KKSSFKVTNT TGEIVAELKQ KQSSRGFAYG DDVLTLEVEP QVDQSLIMAL VTVCGLISRK
201: L

Best Arabidopsis Sequence Match ( AT1G63410.1 )
(BLAST)

001: MARVFPQAAI SSPYMSTERE TFTVWMKSLV YQTNGLTVYN SNGEITYRVE NYDKCSNEVH IMDLHGNILF TIRKKKLWLF GSWYVYRECG SFTSTEEVKP
101: CARIKRSSIR DGDWEVRDET NEVFWILRFD PKFAFQIIDI HGNIIAQVKP KQSSNGITLG EDVLTLEVKP RVDHSLVVTL VTVYGLIKGV V

Arabidopsis Description

Protein LURP-one-related 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH27]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.