Factsheet for PGSC0003DMT400030793

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 3
extracellular 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005210.2.1	Tomato	nucleus	89.67	72.9
VIT_08s0056g00130.t01	Wine grape	cytosol	47.42	42.44
Os11t0121000-00	Rice	plastid	42.25	39.3
Os12t0120500-01	Rice	plastid	41.78	39.04
GSMUA_Achr11P...	Banana	cytosol	33.8	35.12
TraesCS5A01G144800.1	Wheat	nucleus	38.97	34.73
Zm00001d005038_P001	Maize	plastid	41.31	34.51
EES09156	Sorghum	plastid	40.85	34.25
GSMUA_Achr7P21840_001	Banana	cytosol	32.86	33.98
Zm00001d023305_P001	Maize	plastid	41.78	33.58
TraesCS5B01G143600.1	Wheat	mitochondrion	38.97	33.47
HORVU5Hr1G046140.1	Barley	mitochondrion	38.03	33.33
TraesCS5D01G147400.1	Wheat	plastid	40.85	33.08
TraesCS5B01G143700.1	Wheat	plastid	40.85	32.95
TraesCS5D01G147500.1	Wheat	nucleus	38.5	32.8
Zm00001d052373_P001	Maize	plastid	39.44	31.94
Zm00001d044670_P001	Maize	nucleus	41.31	31.54
PGSC0003DMT400001705	Potato	cytosol	29.58	29.86
EES09154	Sorghum	plastid	39.44	29.37
EES15616	Sorghum	plastid	40.38	27.56
GSMUA_Achr4P02400_001	Banana	cytosol	30.52	27.08
PGSC0003DMT400031740	Potato	plastid	27.23	24.68
TraesCS5A01G145000.1	Wheat	nucleus, plastid	40.38	24.09
PGSC0003DMT400032165	Potato	cytosol	19.25	23.7
HORVU5Hr1G046160.1	Barley	mitochondrion	40.85	22.89
PGSC0003DMT400010898	Potato	cytosol	13.62	22.83
PGSC0003DMT400012847	Potato	cytosol	13.15	21.21
PGSC0003DMT400007876	Potato	plastid	19.25	20.4
PGSC0003DMT400032166	Potato	plastid	19.25	19.34
PGSC0003DMT400014913	Potato	plastid	16.9	17.31

Protein Annotations

EnsemblPlants:PGSC0003DMT400030793	EnsemblPlantsGene:PGSC0003DMG400011797	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595	InterPro:LOR
InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF26	PFAM:PF04525	PGSC:PGSC0003DMG400011797
SEG:seg	SUPFAM:SSF54518	UniParc:UPI000296CEBE	UniProt:M1AUT4	MapMan:35.1	:

Description

GTP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011797]

Coordinates

chr9:-:8923336..8924505

Molecular Weight (calculated)

23981.8 Da

IEP (calculated)

9.909

GRAVY (calculated)

-0.371

Length

213 amino acids

Sequence
(BLAST)

001: MSFQGTDGFT VFDKQGRLVF RVDNYTRRKN RAIASRGSRS SGLVLMDAQG KPLLTLRPQM NAQLQYEWNG YNGGEDDDGS TPLFVMRRPP SSLFAMMGAS
101: MTTSSCQAQV FVAGENDNIV MDMKKRQRRP NYRVEGSFRR RNCNITNSDG HIVANISRKV ANATTHTTIL ISDDVFSLVV QPGFEPHIFM AFVIILDRMY
201: PNSYTPLICS KCN

Best Arabidopsis Sequence Match ( AT1G80120.1 )
(BLAST)

001: MKGGLLVDDE FIHGEERSLT VRKTSLFFAG DGFTVYDCKG SLVFRVDSYG GPNTRDTDEV VLMDAHGRCL LTLRRKRPSL RRRWEGYLGE RSDGQKPIFG
101: VRRSSIIGRN SVTVEVYGDY QCSEYLIEGS FGARNCTVVE AETRRKVAEI RRKVDASTNV MLGKDVFSLN VKPGFDGAFA MGLVLVLDQI YGDDLLEVGE
201: EQVHPSAEDL

Arabidopsis Description

Protein LURP-one-related 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.