Factsheet for VIT_08s0056g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	46.22	53.66
Os11t0121000-00	Rice	plastid	49.58	51.53
GSMUA_Achr7P21840_001	Banana	cytosol	44.54	51.46
Os12t0120500-01	Rice	plastid	49.16	51.32
PGSC0003DMT400030793	Potato	cytosol	42.44	47.42
TraesCS5A01G144800.1	Wheat	nucleus	47.48	47.28
HORVU5Hr1G046140.1	Barley	mitochondrion	47.48	46.5
TraesCS5B01G143600.1	Wheat	mitochondrion	47.9	45.97
TraesCS5D01G147500.1	Wheat	nucleus	47.48	45.2
EES09156	Sorghum	plastid	47.9	44.88
Solyc09g005210.2.1	Tomato	nucleus	47.9	43.51
Zm00001d005038_P001	Maize	plastid	46.22	43.14
GSMUA_Achr4P02400_001	Banana	cytosol	41.18	40.83
Zm00001d052373_P001	Maize	plastid	44.96	40.68
TraesCS5D01G147400.1	Wheat	plastid	44.12	39.92
TraesCS5B01G143700.1	Wheat	plastid	44.12	39.77
Zm00001d023305_P001	Maize	plastid	42.86	38.49
EES09154	Sorghum	plastid	45.38	37.76
Zm00001d044670_P001	Maize	nucleus	42.86	36.56
VIT_08s0032g00760.t01	Wine grape	cytosol	30.67	36.5
EES15616	Sorghum	plastid	44.54	33.97
VIT_08s0056g00180.t01	Wine grape	cytosol	30.25	33.33
VIT_09s0002g06920.t01	Wine grape	cytosol	28.99	33.33
VIT_02s0025g00500.t01	Wine grape	cytosol	28.15	30.45
TraesCS5A01G145000.1	Wheat	nucleus, plastid	44.54	29.69
HORVU5Hr1G046160.1	Barley	mitochondrion	44.96	28.16
VIT_02s0025g03730.t01	Wine grape	cytosol	23.53	27.72
VIT_02s0025g03750.t01	Wine grape	cytosol	24.37	27.62
VIT_02s0025g03740.t01	Wine grape	plastid	23.53	27.18

Protein Annotations

EntrezGene:100251907	wikigene:100251907	Gene3D:3.20.90.20	MapMan:35.1	ProteinID:CAQ58611	ProteinID:CAQ58611.1
ProteinID:CAQ58635	ProteinID:CAQ58635.1	ProteinID:CCB55932	ProteinID:CCB55932.1	EMBL:CU914150	EMBL:CU914151
UniProt:F6HMQ7	EMBL:FN595995	InterPro:IPR025659	InterPro:IPR038595	EntrezGene:LOC100251907	wikigene:LOC100251907
InterPro:LOR	InterPro:LOR_sf	PFAM:PF04525	PANTHER:PTHR31087	PANTHER:PTHR31087:SF26	SUPFAM:SSF54518
InterPro:Tubby-like_C	UniParc:UPI0001983AAC	ArrayExpress:VIT_08s0056g00130	EnsemblPlantsGene:VIT_08s0056g00130	EnsemblPlants:VIT_08s0056g00130.t01	RefSeq:XP_002264699
RefSeq:XP_002264699.2	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:276360..277183

Molecular Weight (calculated)

26124.7 Da

IEP (calculated)

10.536

GRAVY (calculated)

-0.235

Length

238 amino acids

Sequence
(BLAST)

001: MSRIHPTTNK CQDLSIKGAS SGVDINNAGD DAVSTNPSCP SAVLTVWKRS SMTFQGTDGF TVFDQHGRLA FRVDNYSRKK GHVKGGLVLM DGAGKALLTL
101: KPQILNMQYQ WNGYKGEGGC GKSLSSSKVL FSMRRRSGLI QSKQEEAEVF MGGAKKQRTT PDFRIEGSFR RRNCKIRSAV TGELVAKIAR KKVNTTVLLA
201: DDVFSLAVQP GFDSQLIMAF VMILDRICVK PFTPFLCS

Best Arabidopsis Sequence Match ( AT1G80120.1 )
(BLAST)

001: MKGGLLVDDE FIHGEERSLT VRKTSLFFAG DGFTVYDCKG SLVFRVDSYG GPNTRDTDEV VLMDAHGRCL LTLRRKRPSL RRRWEGYLGE RSDGQKPIFG
101: VRRSSIIGRN SVTVEVYGDY QCSEYLIEGS FGARNCTVVE AETRRKVAEI RRKVDASTNV MLGKDVFSLN VKPGFDGAFA MGLVLVLDQI YGDDLLEVGE
201: EQVHPSAEDL

Arabidopsis Description

Protein LURP-one-related 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.