CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023305_P001	Maize	plastid	75.0	88.3
Zm00001d044670_P001	Maize	nucleus	71.79	80.29
TraesCS5D01G147400.1	Wheat	plastid	52.56	62.36
TraesCS5B01G143700.1	Wheat	plastid	51.92	61.36
EES09156	Sorghum	plastid	44.23	54.33
EES09154	Sorghum	plastid	46.79	51.05
GSMUA_Achr11P...	Banana	cytosol	32.37	49.27
GSMUA_Achr7P21840_001	Banana	cytosol	32.37	49.03
TraesCS5A01G145000.1	Wheat	nucleus, plastid	53.53	46.78
HORVU5Hr1G046160.1	Barley	mitochondrion	54.49	44.74
VIT_08s0056g00130.t01	Wine grape	cytosol	33.97	44.54
GSMUA_Achr4P02400_001	Banana	cytosol	31.41	40.83
PGSC0003DMT400030793	Potato	cytosol	27.56	40.38
Solyc09g005210.2.1	Tomato	nucleus	31.41	37.4
EES01655	Sorghum	cytosol	24.04	35.89
EES15617	Sorghum	cytosol	26.28	35.65
EES16590	Sorghum	cytosol	24.36	33.78
EES16588	Sorghum	cytosol, nucleus, plastid	24.68	32.08
EES03690	Sorghum	cytosol	22.76	31.84
EES19708	Sorghum	plastid	21.79	30.36
EES09153	Sorghum	cytosol	22.12	29.61
EES04157	Sorghum	plastid	18.27	28.36
EER99890	Sorghum	plastid	18.27	28.08
EES02017	Sorghum	cytosol, mitochondrion, plastid	19.23	27.27
EES04156	Sorghum	plastid	17.95	26.05
EES09152	Sorghum	plastid	20.83	26.0
EES18481	Sorghum	cytosol	19.87	25.73
EES04155	Sorghum	cytosol	17.95	25.69
KXG39402	Sorghum	mitochondrion	18.91	22.87

Protein Annotations

EnsemblPlants:EES15616	EnsemblPlantsGene:SORBI_3008G024700	EntrezGene:8074830	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595
InterPro:LOR	InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF26	PFAM:PF04525
ProteinID:EES15616	ProteinID:EES15616.2	RefSeq:XP_002441778.1	SEG:seg	SUPFAM:SSF54518	UniParc:UPI000B8BB2C9
UniProt:C5YR58	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:2208821..2212416

Molecular Weight (calculated)

33575.5 Da

IEP (calculated)

10.165

GRAVY (calculated)

-0.332

Length

312 amino acids

Sequence
(BLAST)

001: MPPFHSDTCL LPHVSPIYPL SLLSPQVPRN TTTFSSSSSS SSSIDSSSMS TRIHPSSSDA AGRARRRRAA AAAVAERERR PAVYTVWKRS SMGFQGTDGF
101: CVYDDAGNLA FRVDNYSRRR KLCAGELLLM DGHGTPLLSL RPQLLSLHDR WNCYTATENA AVDKKASSTS PAQHQVFTMS RCSALRSSSD NAEVHMSSSR
201: AGSTAAASSS SSSSTFSCKH PQSVSTAPPG YRVEGTFSRR SCKIRHGSDG REAARITRKS AGVASRPVAT LGDDVFSLVV QPGVDVATIM AIVVVMDRIC
301: RRPYTPMVCS SQ

Best Arabidopsis Sequence Match ( AT5G41590.1 )
(BLAST)

001: MFPFLKQRSR SVHGEDAPSS TESTVSVAAA DIGGACTTLT VWRKSLLVSC EGFTVIDSNG DLIYRVDNYA RTRPEELILM DKDGNSLLLM HRTKKITLVD
101: SWGIYEANDT KGETKIPKCP TWYMRKNLKM NILSTKSDIL AYVYSGSFDK KNSYIIKGSY RCKSCKIVHV PLNKTVVEIK RKEVRTKGVR FGSDVFDLVV
201: NPGFDTGLAM ALVLLLDQMF S

Arabidopsis Description

Protein LURP-one-related 17 [Source:UniProtKB/Swiss-Prot;Acc:A0MFL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.