CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0120300-01	Rice	cytosol	54.4	61.54
Os12t0120100-01	Rice	cytosol	54.4	61.26
EES09153	Sorghum	cytosol	55.6	59.66
EES16588	Sorghum	cytosol, nucleus, plastid	57.2	59.58
EES16590	Sorghum	cytosol	51.6	57.33
TraesCS5D01G147200.1	Wheat	cytosol	51.6	56.58
EES15617	Sorghum	cytosol	51.6	56.09
TraesCS5A01G145200.1	Wheat	cytosol	51.6	56.09
TraesCS5B01G144000.1	Wheat	cytosol	50.8	55.7
TraesCS4B01G123400.1	Wheat	cytosol	52.4	53.69
HORVU5Hr1G046200.1	Barley	cytosol	50.0	53.65
HORVU4Hr1G024080.1	Barley	cytosol	52.0	53.28
TraesCS4A01G192000.1	Wheat	cytosol	52.0	53.28
TraesCS4D01G121500.1	Wheat	cytosol	52.0	53.28
EES01655	Sorghum	cytosol	39.6	47.37
GSMUA_Achr11P...	Banana	cytosol	37.2	46.97
GSMUA_Achr4P02410_001	Banana	cytosol, peroxisome, plastid	38.8	46.63
GSMUA_Achr7P21880_001	Banana	cytosol	37.2	46.04
VIT_08s0032g00760.t01	Wine grape	cytosol	36.8	46.0
EES19708	Sorghum	plastid	40.4	45.09
GSMUA_Achr10P...	Banana	plastid	36.4	43.54
VIT_08s0056g00180.t01	Wine grape	cytosol	37.2	43.06
GSMUA_Achr11P...	Banana	cytosol	37.6	40.0
KRH09578	Soybean	cytosol	32.4	38.94
AT2G38640.1	Thale cress	cytosol	30.0	38.27
CDY07715	Canola	cytosol	30.0	38.27
CDY62436	Canola	cytosol	30.0	38.27
Bra000079.1-P	Field mustard	cytosol	29.6	37.76
CDX93313	Canola	cytosol	29.2	37.24
CDY18377	Canola	cytosol	29.2	37.24
Bra000080.1-P	Field mustard	cytosol	28.8	36.92
CDY07714	Canola	cytosol	28.8	36.92
CDY62435	Canola	cytosol	28.8	36.92
Bra005092.1-P	Field mustard	cytosol	28.4	36.41
CDX91482	Canola	cytosol	28.4	36.41
Bra017111.1-P	Field mustard	cytosol	28.4	36.22
CDY60759	Canola	cytosol	27.2	34.87
EES04157	Sorghum	plastid	23.2	28.86
EES03690	Sorghum	cytosol	25.2	28.25
EER99890	Sorghum	plastid	22.8	28.08
EES18481	Sorghum	cytosol	26.0	26.97
EES04156	Sorghum	plastid	21.6	25.12
EES02017	Sorghum	cytosol, mitochondrion, plastid	21.2	24.09
EES09156	Sorghum	plastid	24.4	24.02
EES04155	Sorghum	cytosol	20.8	23.85
KXG39402	Sorghum	mitochondrion	22.8	22.09
EES09154	Sorghum	plastid	25.2	22.03
EES15616	Sorghum	plastid	26.0	20.83

Protein Annotations

EnsemblPlants:EES09152	EnsemblPlantsGene:SORBI_3005G016400	EntrezGene:8083021	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595
InterPro:LOR	InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF5	PFAM:PF04525
ProteinID:EES09152	ProteinID:EES09152.1	RefSeq:XP_002450164.1	SEG:seg	SUPFAM:SSF54518	UniParc:UPI0001A8667C
UniProt:C5Y3J9	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:1454991..1456612

Molecular Weight (calculated)

26981.4 Da

IEP (calculated)

11.123

GRAVY (calculated)

-0.151

Length

250 amino acids

Sequence
(BLAST)

001: MARARPNAIV PEPAAAATTT SSRGAEHHHQ DDQERPAVLT VWRKSLLLSC SGFTVFDASG ALAFRVDCYD SARRGLRRRP WRTTDVVLMD VSGTPLLTVR
101: RRSRLTSLGL APDHWLIFDG DAAAGCRAEH KPKPKPFLSV RRARPALLGA FNGKAPLAYV TPLQASGGEA YVVEGSYGAR ACAVRDARGD AVAEVRRKER
201: VGDDVFRLVA GPRIGAPLAM ALVIALDEMF AAAGSVSARR PSLLRRTWSA

Best Arabidopsis Sequence Match ( AT5G41590.1 )
(BLAST)

001: MFPFLKQRSR SVHGEDAPSS TESTVSVAAA DIGGACTTLT VWRKSLLVSC EGFTVIDSNG DLIYRVDNYA RTRPEELILM DKDGNSLLLM HRTKKITLVD
101: SWGIYEANDT KGETKIPKCP TWYMRKNLKM NILSTKSDIL AYVYSGSFDK KNSYIIKGSY RCKSCKIVHV PLNKTVVEIK RKEVRTKGVR FGSDVFDLVV
201: NPGFDTGLAM ALVLLLDQMF S

Arabidopsis Description

Protein LURP-one-related 17 [Source:UniProtKB/Swiss-Prot;Acc:A0MFL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.