CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044474_P001	Maize	cytosol	72.08	72.08
Os11t0120300-01	Rice	cytosol	58.33	63.35
EES16590	Sorghum	cytosol	58.75	62.67
Os12t0120100-01	Rice	cytosol	57.92	62.61
EES15617	Sorghum	cytosol	58.75	61.3
TraesCS5D01G147200.1	Wheat	cytosol	57.92	60.96
EES09153	Sorghum	cytosol	58.75	60.52
TraesCS5B01G144000.1	Wheat	cytosol	57.08	60.09
TraesCS5A01G145200.1	Wheat	cytosol	57.5	60.0
HORVU5Hr1G046200.1	Barley	cytosol	56.67	58.37
EES09152	Sorghum	plastid	59.58	57.2
TraesCS4B01G123400.1	Wheat	cytosol	56.67	55.74
TraesCS4D01G121500.1	Wheat	cytosol	56.25	55.33
HORVU4Hr1G024080.1	Barley	cytosol	56.25	55.33
TraesCS4A01G192000.1	Wheat	cytosol	55.83	54.92
EES01655	Sorghum	cytosol	46.67	53.59
EES19708	Sorghum	plastid	46.67	50.0
GSMUA_Achr11P...	Banana	cytosol	40.83	49.49
GSMUA_Achr4P02410_001	Banana	cytosol, peroxisome, plastid	42.08	48.56
GSMUA_Achr7P21880_001	Banana	cytosol	40.83	48.51
VIT_08s0032g00760.t01	Wine grape	cytosol	39.17	47.0
GSMUA_Achr10P...	Banana	plastid	40.0	45.93
VIT_08s0056g00180.t01	Wine grape	cytosol	40.83	45.37
CDY62436	Canola	cytosol	35.83	43.88
CDY07715	Canola	cytosol	35.83	43.88
Bra000079.1-P	Field mustard	cytosol	35.42	43.37
CDY07714	Canola	cytosol	35.0	43.08
CDY62435	Canola	cytosol	35.0	43.08
AT2G38640.1	Thale cress	cytosol	35.0	42.86
Bra000080.1-P	Field mustard	cytosol	34.58	42.56
GSMUA_Achr11P...	Banana	cytosol	41.67	42.55
Bra017111.1-P	Field mustard	cytosol	34.17	41.84
CDX91482	Canola	cytosol	33.75	41.54
CDX93313	Canola	cytosol	33.75	41.33
CDY18377	Canola	cytosol	33.75	41.33
Bra005092.1-P	Field mustard	cytosol	33.33	41.03
KRH09578	Soybean	cytosol	35.42	40.87
CDY60759	Canola	cytosol	32.08	39.49
EES03690	Sorghum	cytosol	27.92	30.04
EES04157	Sorghum	plastid	25.0	29.85
EES18481	Sorghum	cytosol	28.75	28.63
EES04156	Sorghum	plastid	25.0	27.91
EER99890	Sorghum	plastid	22.92	27.09
EES09156	Sorghum	plastid	28.33	26.77
EES09154	Sorghum	plastid	30.42	25.52
EES04155	Sorghum	cytosol	22.92	25.23
EES15616	Sorghum	plastid	32.08	24.68
EES02017	Sorghum	cytosol, mitochondrion, plastid	21.67	23.64
KXG39402	Sorghum	mitochondrion	23.33	21.71

Protein Annotations

EnsemblPlants:EES16588	EnsemblPlantsGene:SORBI_3008G025300	EntrezGene:8074833	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595
InterPro:LOR	InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF5	PFAM:PF04525
ProteinID:AAO16700.1	ProteinID:EES16588	ProteinID:EES16588.1	RefSeq:XP_002442750.1	SEG:seg	SUPFAM:SSF54518
UniParc:UPI0000004F17	UniProt:Q84YE1	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:2270458..2272082

Molecular Weight (calculated)

26049.9 Da

IEP (calculated)

9.794

GRAVY (calculated)

-0.205

Length

240 amino acids

Sequence
(BLAST)

001: MPRTKVHPNA ADPEQHAAAV TVDVTPDPPP PPPTVLTVWR RSLLFNCDGF TVFDANGDLA FRVDSYDASG RRRAEVVLMD ATGTPLLTVR RKRRLGVLVD
101: HWVIYDGDAA DAEAAEPSAT SSKPLLSVRR RHRRASSSSS SRAKALAYVT PLQVSSSSYV VEGSYGRRAC VVREPDHARG DAVVAEVRRK DAVLGDDVFR
201: LVVEPRLGAT LAMGLVIALD EMFAGGRSSS SLLRSRTWSV

Best Arabidopsis Sequence Match ( AT5G41590.1 )
(BLAST)

001: MFPFLKQRSR SVHGEDAPSS TESTVSVAAA DIGGACTTLT VWRKSLLVSC EGFTVIDSNG DLIYRVDNYA RTRPEELILM DKDGNSLLLM HRTKKITLVD
101: SWGIYEANDT KGETKIPKCP TWYMRKNLKM NILSTKSDIL AYVYSGSFDK KNSYIIKGSY RCKSCKIVHV PLNKTVVEIK RKEVRTKGVR FGSDVFDLVV
201: NPGFDTGLAM ALVLLLDQMF S

Arabidopsis Description

Protein LURP-one-related 17 [Source:UniProtKB/Swiss-Prot;Acc:A0MFL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.