CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005038_P001	Maize	plastid	78.74	78.43
Os11t0121000-00	Rice	plastid	60.24	66.81
Os12t0120500-01	Rice	plastid	59.45	66.23
TraesCS5A01G144800.1	Wheat	nucleus	59.84	63.6
HORVU5Hr1G046140.1	Barley	mitochondrion	58.66	61.32
TraesCS5B01G143600.1	Wheat	mitochondrion	59.84	61.29
TraesCS5D01G147500.1	Wheat	nucleus	59.84	60.8
EES09154	Sorghum	plastid	61.42	54.55
GSMUA_Achr11P...	Banana	cytosol	42.13	52.2
GSMUA_Achr7P21840_001	Banana	cytosol	42.13	51.94
VIT_08s0056g00130.t01	Wine grape	cytosol	44.88	47.9
EES15616	Sorghum	plastid	54.33	44.23
GSMUA_Achr4P02400_001	Banana	cytosol	40.16	42.5
PGSC0003DMT400030793	Potato	cytosol	34.25	40.85
Solyc09g005210.2.1	Tomato	nucleus	38.19	37.02
EES15617	Sorghum	cytosol	28.74	31.74
EES16590	Sorghum	cytosol	27.56	31.11
EES01655	Sorghum	cytosol	25.59	31.1
EES03690	Sorghum	cytosol	26.38	30.04
EES04157	Sorghum	plastid	23.62	29.85
EES02017	Sorghum	cytosol, mitochondrion, plastid	25.59	29.55
EES19708	Sorghum	plastid	25.59	29.02
EES16588	Sorghum	cytosol, nucleus, plastid	26.77	28.33
EES09153	Sorghum	cytosol	25.98	28.33
EES18481	Sorghum	cytosol	24.41	25.73
EES04155	Sorghum	cytosol	21.65	25.23
EER99890	Sorghum	plastid	20.08	25.12
EES04156	Sorghum	plastid	20.87	24.65
EES09152	Sorghum	plastid	24.02	24.4
KXG39402	Sorghum	mitochondrion	20.47	20.16

Protein Annotations

EnsemblPlants:EES09156	EnsemblPlantsGene:SORBI_3005G016700	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595	InterPro:LOR
InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF26	PFAM:PF04525	ProteinID:EES09156
ProteinID:EES09156.2	SEG:seg	SUPFAM:SSF54518	UniParc:UPI00081ACFED	UniProt:C5Y3K3	MapMan:35.1

Description

hypothetical protein

Coordinates

chr5:-:1486673..1488557

Molecular Weight (calculated)

27356.7 Da

IEP (calculated)

8.273

GRAVY (calculated)

-0.154

Length

254 amino acids

Sequence
(BLAST)

001: MTAAAFPDRS SGSMMAISAS RIHPSSAAET TPKPTPTRPL VPLPPGGACG GDDGADASVG CAAALHHTVW KRSSMGFHGT DGFSVYDAAG ALAFRVDNYS
101: RRQKLFAGEL LLMDGHGAPL LALRPQIFSM HDQWNCYNAS EEGQAKTTSS HRLFSMRKCS VLQKGHEAEV SMSGSSCSTS FWVEGCFRRR SCKIRNGDGE
201: EVARITRKKS NSLTLGDDVF SLVVQPGVDC AMIMAFVVVL DRICWKPYTP LICS

Best Arabidopsis Sequence Match ( AT1G80120.1 )
(BLAST)

001: MKGGLLVDDE FIHGEERSLT VRKTSLFFAG DGFTVYDCKG SLVFRVDSYG GPNTRDTDEV VLMDAHGRCL LTLRRKRPSL RRRWEGYLGE RSDGQKPIFG
101: VRRSSIIGRN SVTVEVYGDY QCSEYLIEGS FGARNCTVVE AETRRKVAEI RRKVDASTNV MLGKDVFSLN VKPGFDGAFA MGLVLVLDQI YGDDLLEVGE
201: EQVHPSAEDL

Arabidopsis Description

Protein LURP-one-related 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.