Factsheet for TraesCS5D01G147500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G144800.1	Wheat	nucleus	94.4	98.74
TraesCS5B01G143600.1	Wheat	mitochondrion	97.2	97.98
HORVU5Hr1G046140.1	Barley	mitochondrion	92.4	95.06
Os11t0121000-00	Rice	plastid	62.0	67.69
Os12t0120500-01	Rice	plastid	61.6	67.54
EES09156	Sorghum	plastid	60.8	59.84
Zm00001d005038_P001	Maize	plastid	57.6	56.47
TraesCS5D01G147400.1	Wheat	plastid	58.4	55.51
GSMUA_Achr7P21840_001	Banana	cytosol	41.2	50.0
GSMUA_Achr11P...	Banana	cytosol	40.4	49.27
VIT_08s0056g00130.t01	Wine grape	cytosol	45.2	47.48
GSMUA_Achr4P02400_001	Banana	cytosol	38.8	40.42
PGSC0003DMT400030793	Potato	cytosol	32.8	38.5
Solyc09g005210.2.1	Tomato	nucleus	36.0	34.35
TraesCS3D01G334200.1	Wheat	cytosol	26.0	32.02
TraesCS3D01G334300.1	Wheat	cytosol, extracellular, peroxisome	25.6	30.77
TraesCS1D01G303100.1	Wheat	extracellular, plasma membrane	25.6	30.62
TraesCS3D01G334400.1	Wheat	cytosol, extracellular, peroxisome	25.2	30.58
TraesCS3D01G442300.1	Wheat	plastid	22.8	29.69
TraesCS3D01G442200.1	Wheat	cytosol, plastid	23.2	29.59
TraesCS3D01G442800.1	Wheat	cytosol, plastid	23.6	29.35
TraesCS3D01G442600.1	Wheat	cytosol	23.2	29.0
TraesCS5D01G147200.1	Wheat	cytosol	26.0	28.51
TraesCS3D01G443000.1	Wheat	plastid	22.4	28.43
TraesCS3D01G443100.1	Wheat	cytosol, plastid	22.4	28.28
TraesCS3D01G306600.1	Wheat	cytosol	24.4	27.85
TraesCS4D01G121500.1	Wheat	cytosol	26.8	27.46
TraesCS2D01G114400.1	Wheat	plastid	22.4	25.93
TraesCS3D01G442400.1	Wheat	cytosol	22.4	25.57
TraesCS1D01G330600.1	Wheat	cytosol	22.0	23.31
TraesCS3D01G442700.1	Wheat	cytosol	22.4	23.14
TraesCS3D01G442500.1	Wheat	cytosol	20.4	22.77
TraesCS4D01G168500.1	Wheat	mitochondrion	20.8	20.16

Protein Annotations

EnsemblPlants:TraesCS5D01G147500.1	EnsemblPlantsGene:TraesCS5D01G147500	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595	InterPro:LOR
InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF26	PFAM:PF04525	SEG:seg
SUPFAM:SSF54518	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:233747700..233748997

Molecular Weight (calculated)

27614.9 Da

IEP (calculated)

8.981

GRAVY (calculated)

-0.392

Length

250 amino acids

Sequence
(BLAST)

001: MSRIHPNAEA SRRLLRDGAG AGAAEAAPAC YTVWMRSSMG FQGTDGFSVY DAGGELAFRV DNYSRRRKIF AGELTLMDGH GAPLLSLRPQ IISMHDQWNC
101: YKAPEEGQAK RARSQQLFSV RKCSVLQNNR EAEVYMSSAC TTTTTTTTTT DASASDHGTT GHQSPGFWIE GCFRRRNCKI RRAHDGKEVA RIARKKARTP
201: ATPDTAPLTL GEDVFSLVVQ RDADCTMIMA LVVVLDRICW RPYTPLICSS

Best Arabidopsis Sequence Match ( AT5G41590.1 )
(BLAST)

001: MFPFLKQRSR SVHGEDAPSS TESTVSVAAA DIGGACTTLT VWRKSLLVSC EGFTVIDSNG DLIYRVDNYA RTRPEELILM DKDGNSLLLM HRTKKITLVD
101: SWGIYEANDT KGETKIPKCP TWYMRKNLKM NILSTKSDIL AYVYSGSFDK KNSYIIKGSY RCKSCKIVHV PLNKTVVEIK RKEVRTKGVR FGSDVFDLVV
201: NPGFDTGLAM ALVLLLDQMF S

Arabidopsis Description

Protein LURP-one-related 17 [Source:UniProtKB/Swiss-Prot;Acc:A0MFL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.