Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G340800.1 | Wheat | cytosol | 99.09 | 98.64 |
| TraesCS3A01G296300.1 | Wheat | cytosol | 98.63 | 98.18 |
| HORVU3Hr1G075150.1 | Barley | cytosol | 96.8 | 96.8 |
| Os01t0771000-01 | Rice | cytosol | 85.84 | 82.82 |
| EES03690 | Sorghum | cytosol | 82.19 | 80.72 |
| Zm00001d043318_P001 | Maize | cytosol | 79.91 | 78.48 |
| TraesCS1D01G330600.1 | Wheat | cytosol | 66.21 | 61.44 |
| GSMUA_Achr3P13680_001 | Banana | cytosol | 33.33 | 55.73 |
| VIT_09s0002g06920.t01 | Wine grape | cytosol | 47.03 | 49.76 |
| Solyc03g116710.2.1 | Tomato | cytosol | 47.49 | 49.29 |
| PGSC0003DMT400001705 | Potato | cytosol | 47.03 | 48.82 |
| AT1G80120.1 | Thale cress | cytosol | 46.58 | 48.57 |
| CDY37567 | Canola | cytosol | 46.12 | 48.1 |
| CDY41119 | Canola | cytosol | 46.12 | 48.1 |
| Bra008497.1-P | Field mustard | cytosol | 46.12 | 48.1 |
| KRH44464 | Soybean | cytosol | 47.95 | 47.95 |
| KRH09722 | Soybean | cytosol | 47.03 | 47.03 |
| KRH47444 | Soybean | cytosol | 47.03 | 47.03 |
| CDY58464 | Canola | cytosol | 45.66 | 46.95 |
| KRH23583 | Soybean | cytosol | 47.03 | 46.82 |
| Bra001606.1-P | Field mustard | cytosol | 45.21 | 46.48 |
| CDX75845 | Canola | cytosol | 44.75 | 46.01 |
| CDY30113 | Canola | cytosol | 45.21 | 45.21 |
| Bra027206.1-P | Field mustard | cytosol | 44.75 | 44.75 |
| AT3G15810.1 | Thale cress | cytosol | 44.29 | 44.09 |
| CDX87294 | Canola | cytosol | 44.75 | 38.13 |
| Bra035195.1-P | Field mustard | cytosol | 35.62 | 37.14 |
| TraesCS3D01G334400.1 | Wheat | cytosol, extracellular, peroxisome | 28.77 | 30.58 |
| TraesCS3D01G334200.1 | Wheat | cytosol | 28.31 | 30.54 |
| TraesCS3D01G334300.1 | Wheat | cytosol, extracellular, peroxisome | 28.77 | 30.29 |
| TraesCS5D01G147200.1 | Wheat | cytosol | 31.51 | 30.26 |
| TraesCS4D01G121500.1 | Wheat | cytosol | 32.42 | 29.1 |
| TraesCS3D01G442200.1 | Wheat | cytosol, plastid | 26.03 | 29.08 |
| TraesCS1D01G303100.1 | Wheat | extracellular, plasma membrane | 27.4 | 28.71 |
| TraesCS5D01G147400.1 | Wheat | plastid | 31.96 | 26.62 |
| TraesCS3D01G442600.1 | Wheat | cytosol | 24.2 | 26.5 |
| TraesCS3D01G443100.1 | Wheat | cytosol, plastid | 23.74 | 26.26 |
| TraesCS3D01G442800.1 | Wheat | cytosol, plastid | 23.74 | 25.87 |
| TraesCS3D01G442300.1 | Wheat | plastid | 22.37 | 25.52 |
| TraesCS3D01G443000.1 | Wheat | plastid | 22.37 | 24.87 |
| TraesCS5D01G147500.1 | Wheat | nucleus | 27.85 | 24.4 |
| TraesCS2D01G114400.1 | Wheat | plastid | 23.29 | 23.61 |
| TraesCS3D01G442400.1 | Wheat | cytosol | 22.37 | 22.37 |
| TraesCS3D01G442500.1 | Wheat | cytosol | 21.0 | 20.54 |
| TraesCS3D01G442700.1 | Wheat | cytosol | 19.63 | 17.77 |
| TraesCS4D01G168500.1 | Wheat | mitochondrion | 18.72 | 15.89 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G306600.1 | EnsemblPlantsGene:TraesCS3D01G306600 | Gene3D:3.20.90.20 | InterPro:IPR025659 | InterPro:IPR038595 | InterPro:LOR |
| InterPro:LOR_sf | InterPro:Tubby-like_C | PANTHER:PTHR31087 | PANTHER:PTHR31087:SF2 | PFAM:PF04525 | SEG:seg |
| SUPFAM:SSF54518 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:420451125..420451784
Molecular Weight (calculated)
23022.4 Da
IEP (calculated)
7.510
GRAVY (calculated)
-0.122
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVVGEEYCD LKERLLTVRK TSHFSPGDGF AAYDNRTGGL AFRADTYGRG HGGGAASPGE LALLGPAGEP LLTVRRRRPS LHQRWEGFLG ARADGQKSLF
101: SARRSSILGG AGRGAVVELL PSPASAAAAE LRVEGSFGRR CCRVVAKGDD GEETVVAEIR RKVDEAARVV MGRDVFVLRV GAGFDAAFAM GIVLVLDQIA
201: GDEADGGDAG QDAVHAKIW
101: SARRSSILGG AGRGAVVELL PSPASAAAAE LRVEGSFGRR CCRVVAKGDD GEETVVAEIR RKVDEAARVV MGRDVFVLRV GAGFDAAFAM GIVLVLDQIA
201: GDEADGGDAG QDAVHAKIW
001: MELVEETIPK EGKKMGERIV VDKAYLYQED KPLTVCKTSL FYTGDGFAAY DCRGDIIFRV DSYGPDTRDN DEIVLMDATG KCLLTVKRKR PTLHQRWEGF
101: LGERSEGQKP IFSVRRSSII GRCTMEVEVY DGTGEEYIID GDFSQRSCLI YDTKKCTVAE IKRKVDASTN VMLGRDVFTL EIKPGFDGAF AMGLVVVLDQ
201: INGDDPVEIG DEQVHPFVED
101: LGERSEGQKP IFSVRRSSII GRCTMEVEVY DGTGEEYIID GDFSQRSCLI YDTKKCTVAE IKRKVDASTN VMLGRDVFTL EIKPGFDGAF AMGLVVVLDQ
201: INGDDPVEIG DEQVHPFVED
Arabidopsis Description
Protein LURP-one-related 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVZ8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.