Factsheet for Solyc03g116710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001705	Potato	cytosol	95.73	95.73
Bra001606.1-P	Field mustard	cytosol	59.24	58.69
CDX75845	Canola	cytosol	58.77	58.22
CDY58464	Canola	cytosol	58.77	58.22
AT3G15810.1	Thale cress	cytosol	60.19	57.73
CDY30113	Canola	cytosol	59.72	57.53
Bra027206.1-P	Field mustard	cytosol	58.29	56.16
GSMUA_Achr3P13680_001	Banana	cytosol	33.65	54.2
TraesCS3B01G340800.1	Wheat	cytosol	49.76	47.73
TraesCS3A01G296300.1	Wheat	cytosol	49.76	47.73
TraesCS3D01G306600.1	Wheat	cytosol	49.29	47.49
HORVU3Hr1G075150.1	Barley	cytosol	49.29	47.49
Os01t0771000-01	Rice	cytosol	49.29	45.81
EES03690	Sorghum	cytosol	48.34	45.74
Zm00001d043318_P001	Maize	cytosol	47.39	44.84
Os05t0510100-01	Rice	cytosol	46.92	41.77
HORVU1Hr1G077760.1	Barley	cytosol	45.5	41.74
TraesCS1B01G341900.1	Wheat	cytosol	46.45	41.7
TraesCS1D01G330600.1	Wheat	cytosol	46.45	41.53
EES18481	Sorghum	cytosol	46.45	40.66
TraesCS1A01G328100.1	Wheat	cytosol	46.45	40.33
Zm00001d000310_P001	Maize	cytosol	46.45	40.16
Solyc08g081680.1.1	Tomato	nucleus	34.12	31.17
Solyc08g080760.1.1	Tomato	mitochondrion	26.54	28.14
Solyc08g080770.2.1	Tomato	plastid	26.54	26.42
Solyc08g080750.2.1	Tomato	plastid	25.12	26.24
Solyc09g005210.2.1	Tomato	nucleus	32.23	25.95
Solyc12g056310.1.1	Tomato	plastid	23.22	24.87
Solyc08g007980.2.1	Tomato	plastid	23.22	23.56

Protein Annotations

EnsemblPlants:Solyc03g116710.2.1	EnsemblPlantsGene:Solyc03g116710.2	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595	InterPro:LOR
InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF2	PFAM:PF04525	SUPFAM:SSF54518
UniParc:UPI0002768F35	UniProt:K4BLH3	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3:-:66000338..66001473

Molecular Weight (calculated)

23709.1 Da

IEP (calculated)

5.150

GRAVY (calculated)

-0.255

Length

211 amino acids

Sequence
(BLAST)

001: MKSKVVVEDT FVHTEETSLT VRKTSLFFTG DGFTAYDCKG QLVFRVDTYG PDSRDLGELV LMDATGRCLL TVRRKRPSLH NRWEGYLGER EEGKKPIFSV
101: RRSSIIGRSN VTVEVYSNPT EEYQIEGSFA QRNCTFFNAD KVSVAEIRRK VDACAHVVLG KDVFSLSIKP GFDCAFAMGL VLVLDQIQVD DFAENRIDAD
201: PIITDDPNFS S

Best Arabidopsis Sequence Match ( AT3G15810.1 )
(BLAST)

001: MELVEETIPK EGKKMGERIV VDKAYLYQED KPLTVCKTSL FYTGDGFAAY DCRGDIIFRV DSYGPDTRDN DEIVLMDATG KCLLTVKRKR PTLHQRWEGF
101: LGERSEGQKP IFSVRRSSII GRCTMEVEVY DGTGEEYIID GDFSQRSCLI YDTKKCTVAE IKRKVDASTN VMLGRDVFTL EIKPGFDGAF AMGLVVVLDQ
201: INGDDPVEIG DEQVHPFVED

Arabidopsis Description

Protein LURP-one-related 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.