Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G330600.1 | Wheat | cytosol | 95.88 | 98.73 |
| TraesCS1B01G341900.1 | Wheat | cytosol | 93.42 | 96.6 |
| HORVU1Hr1G077760.1 | Barley | cytosol | 83.95 | 88.7 |
| Os05t0510100-01 | Rice | cytosol | 75.72 | 77.64 |
| EES18481 | Sorghum | cytosol | 74.49 | 75.1 |
| Zm00001d000310_P001 | Maize | cytosol | 75.31 | 75.0 |
| TraesCS3A01G296300.1 | Wheat | cytosol | 59.26 | 65.45 |
| GSMUA_Achr3P13680_001 | Banana | cytosol | 27.98 | 51.91 |
| PGSC0003DMT400001705 | Potato | cytosol | 41.15 | 47.39 |
| Solyc03g116710.2.1 | Tomato | cytosol | 40.33 | 46.45 |
| VIT_09s0002g06920.t01 | Wine grape | cytosol | 39.51 | 46.38 |
| AT1G80120.1 | Thale cress | cytosol | 38.27 | 44.29 |
| CDY37567 | Canola | cytosol | 37.86 | 43.81 |
| Bra008497.1-P | Field mustard | cytosol | 37.86 | 43.81 |
| CDY41119 | Canola | cytosol | 37.86 | 43.81 |
| KRH44464 | Soybean | cytosol | 39.09 | 43.38 |
| CDY58464 | Canola | cytosol | 37.86 | 43.19 |
| KRH47444 | Soybean | cytosol | 38.68 | 42.92 |
| Bra001606.1-P | Field mustard | cytosol | 37.45 | 42.72 |
| CDY30113 | Canola | cytosol | 38.27 | 42.47 |
| CDX75845 | Canola | cytosol | 37.04 | 42.25 |
| KRH09722 | Soybean | cytosol | 37.86 | 42.01 |
| Bra027206.1-P | Field mustard | cytosol | 37.86 | 42.01 |
| KRH23583 | Soybean | cytosol | 37.45 | 41.36 |
| AT3G15810.1 | Thale cress | cytosol | 36.63 | 40.45 |
| CDX87294 | Canola | cytosol | 37.86 | 35.8 |
| Bra035195.1-P | Field mustard | cytosol | 30.45 | 35.24 |
| TraesCS3A01G449500.1 | Wheat | cytosol | 21.4 | 30.77 |
| TraesCS4A01G192000.1 | Wheat | cytosol | 30.86 | 30.74 |
| TraesCS5A01G145200.1 | Wheat | cytosol | 27.98 | 29.57 |
| TraesCS1A01G303600.1 | Wheat | extracellular, plasma membrane | 24.28 | 28.64 |
| TraesCS5A01G557700.1 | Wheat | cytosol | 24.28 | 28.64 |
| TraesCS3A01G449600.1 | Wheat | mitochondrion | 14.4 | 27.56 |
| TraesCS3A01G449800.1 | Wheat | cytosol | 21.81 | 26.9 |
| TraesCS3A01G340700.1 | Wheat | cytosol, extracellular, peroxisome | 22.22 | 26.73 |
| TraesCS3A01G340800.1 | Wheat | cytosol, extracellular, peroxisome | 22.63 | 26.7 |
| TraesCS3A01G450000.1 | Wheat | cytosol | 21.4 | 26.53 |
| TraesCS3A01G450200.1 | Wheat | plastid | 21.4 | 26.26 |
| TraesCS3A01G449900.1 | Wheat | plastid | 20.99 | 26.02 |
| TraesCS3A01G450100.1 | Wheat | cytosol | 20.58 | 25.51 |
| TraesCS3A01G449700.1 | Wheat | plastid | 20.16 | 25.39 |
| TraesCS2A01G113800.1 | Wheat | plastid | 20.99 | 24.4 |
| TraesCS5A01G144800.1 | Wheat | nucleus | 23.46 | 23.85 |
| TraesCS3A01G340900.1 | Wheat | mitochondrion | 23.46 | 20.58 |
| TraesCS5A01G145000.1 | Wheat | nucleus, plastid | 27.16 | 18.49 |
| TraesCS4A01G142700.1 | Wheat | mitochondrion, plastid | 16.46 | 16.46 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G328100.1 | EnsemblPlantsGene:TraesCS1A01G328100 | Gene3D:3.20.90.20 | InterPro:IPR025659 | InterPro:IPR038595 | InterPro:LOR |
| InterPro:LOR_sf | InterPro:Tubby-like_C | PANTHER:PTHR31087 | PANTHER:PTHR31087:SF8 | PFAM:PF04525 | SEG:seg |
| SUPFAM:SSF54518 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:517398066..517398797
Molecular Weight (calculated)
25067.7 Da
IEP (calculated)
5.027
GRAVY (calculated)
0.033
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGEAPAPA ATVVVGEEHC EAEDRELTVR KTTLFSPGDG LEAYDHRTGA LAFRLETYGR GGACGGGAAA GDLALLGAAG DPVLTVRRRR PSLHHRWDGF
101: LGDGGAAGGA KPLFSARRSS ILGAGAGVLV DLLAPAHSPA AKEFRVDGSF PRRCCRVVAV ASSGGAGEVE EGEDQETVVA EVRRKVDEGA HVVLGRDVFV
201: LWVRAGFDAA FAMGIVLVLG RITGDELDGA LGEELLLEAT SPV
101: LGDGGAAGGA KPLFSARRSS ILGAGAGVLV DLLAPAHSPA AKEFRVDGSF PRRCCRVVAV ASSGGAGEVE EGEDQETVVA EVRRKVDEGA HVVLGRDVFV
201: LWVRAGFDAA FAMGIVLVLG RITGDELDGA LGEELLLEAT SPV
001: MELVEETIPK EGKKMGERIV VDKAYLYQED KPLTVCKTSL FYTGDGFAAY DCRGDIIFRV DSYGPDTRDN DEIVLMDATG KCLLTVKRKR PTLHQRWEGF
101: LGERSEGQKP IFSVRRSSII GRCTMEVEVY DGTGEEYIID GDFSQRSCLI YDTKKCTVAE IKRKVDASTN VMLGRDVFTL EIKPGFDGAF AMGLVVVLDQ
201: INGDDPVEIG DEQVHPFVED
101: LGERSEGQKP IFSVRRSSII GRCTMEVEVY DGTGEEYIID GDFSQRSCLI YDTKKCTVAE IKRKVDASTN VMLGRDVFTL EIKPGFDGAF AMGLVVVLDQ
201: INGDDPVEIG DEQVHPFVED
Arabidopsis Description
Protein LURP-one-related 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVZ8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.