Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G80120.1 | CDX73678 | AT3G51920.1 | 17360592 |
| AT1G80120.1 | CDX95314 | AT3G51920.1 | 17360592 |
| AT1G80120.1 | CDY23174 | AT3G51920.1 | 17360592 |
| AT1G80120.1 | CDX92401 | AT5G21274.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37567 | Canola | cytosol | 100.0 | 100.0 |
| Bra008497.1-P | Field mustard | cytosol | 99.52 | 99.52 |
| AT1G80120.1 | Thale cress | cytosol | 92.86 | 92.86 |
| CDX87294 | Canola | cytosol | 93.81 | 76.65 |
| VIT_09s0002g06920.t01 | Wine grape | cytosol | 65.71 | 66.67 |
| KRH47444 | Soybean | cytosol | 65.71 | 63.01 |
| CDX75845 | Canola | cytosol | 62.86 | 61.97 |
| CDY58464 | Canola | cytosol | 62.38 | 61.5 |
| KRH44464 | Soybean | cytosol | 63.81 | 61.19 |
| KRH23583 | Soybean | cytosol | 63.81 | 60.91 |
| CDY30113 | Canola | cytosol | 63.33 | 60.73 |
| KRH09722 | Soybean | cytosol | 62.86 | 60.27 |
| GSMUA_Achr3P13680_001 | Banana | cytosol | 32.86 | 52.67 |
| TraesCS3B01G340800.1 | Wheat | cytosol | 48.57 | 46.36 |
| TraesCS3D01G306600.1 | Wheat | cytosol | 48.1 | 46.12 |
| HORVU3Hr1G075150.1 | Barley | cytosol | 48.1 | 46.12 |
| TraesCS3A01G296300.1 | Wheat | cytosol | 47.62 | 45.45 |
| Os01t0771000-01 | Rice | cytosol | 47.62 | 44.05 |
| EES03690 | Sorghum | cytosol | 46.19 | 43.5 |
| Zm00001d043318_P001 | Maize | cytosol | 45.71 | 43.05 |
| CDX91482 | Canola | cytosol | 37.62 | 40.51 |
| HORVU1Hr1G077760.1 | Barley | cytosol | 44.29 | 40.43 |
| CDY18377 | Canola | cytosol | 37.62 | 40.31 |
| CDX93313 | Canola | cytosol | 37.62 | 40.31 |
| Os05t0510100-01 | Rice | cytosol | 44.76 | 39.66 |
| CDY60759 | Canola | cytosol | 36.67 | 39.49 |
| TraesCS1B01G341900.1 | Wheat | cytosol | 43.81 | 39.15 |
| TraesCS1D01G330600.1 | Wheat | cytosol | 43.81 | 38.98 |
| CDY62435 | Canola | cytosol | 36.19 | 38.97 |
| Zm00001d000310_P001 | Maize | cytosol | 45.24 | 38.93 |
| CDY62436 | Canola | cytosol | 36.19 | 38.78 |
| EES18481 | Sorghum | cytosol | 44.29 | 38.59 |
| CDY07714 | Canola | cytosol | 35.71 | 38.46 |
| CDY07715 | Canola | cytosol | 35.71 | 38.27 |
| TraesCS1A01G328100.1 | Wheat | cytosol | 43.81 | 37.86 |
| CDY33238 | Canola | cytosol, peroxisome, plastid | 29.52 | 26.96 |
| CDY67855 | Canola | peroxisome | 29.05 | 26.52 |
| CDY49893 | Canola | cytosol | 23.81 | 26.18 |
| CDY24068 | Canola | peroxisome | 23.81 | 24.88 |
| CDX75761 | Canola | cytosol | 27.14 | 24.78 |
| CDY71164 | Canola | cytosol, extracellular, peroxisome | 22.38 | 24.48 |
| CDX82489 | Canola | cytosol | 26.67 | 24.35 |
| CDY45367 | Canola | cytosol | 17.62 | 24.03 |
| CDY24067 | Canola | cytosol | 22.86 | 23.88 |
| CDY24069 | Canola | cytosol | 18.1 | 21.71 |
| CDY36612 | Canola | cytosol | 13.33 | 20.59 |
| CDY36610 | Canola | cytosol | 12.86 | 18.24 |
Protein Annotations
| EnsemblPlants:CDY41119 | EnsemblPlantsGene:GSBRNA2T00072468001 | Gene3D:3.20.90.20 | InterPro:IPR025659 | InterPro:IPR038595 | InterPro:LOR |
| InterPro:LOR_sf | InterPro:Tubby-like_C | PANTHER:PTHR31087 | PANTHER:PTHR31087:SF2 | PFAM:PF04525 | ProteinID:CDY37567.1 |
| ProteinID:CDY41119 | ProteinID:CDY41119.1 | SEG:seg | SUPFAM:SSF54518 | UniParc:UPI0000F35E5D | UniProt:A0A078HUU2 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC05g11100DBnaA02g20030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUU2]
Coordinates
chrLK032490:+:215164..216257
Molecular Weight (calculated)
23535.9 Da
IEP (calculated)
5.178
GRAVY (calculated)
-0.316
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGLLVDDE FIHGEETNLT VRKTSLFFSG DGFTVYDCKG SLVFRVDSYG GPNNRDTDEV VLMDAHGRCL LTLRRKRPSL RRRWEGYLGE RTDGQKPIFG
101: VRRSSIIGRN SVTVEVYAEY ECSEYLIEGN FGQRSCTVVE AETRRKVAEI RRKVDASTNV MLGKDVFSLN VKAGFDGAFA MGLVLVLDQI YGDDYVEVGE
201: EQVHPSAVDL
101: VRRSSIIGRN SVTVEVYAEY ECSEYLIEGN FGQRSCTVVE AETRRKVAEI RRKVDASTNV MLGKDVFSLN VKAGFDGAFA MGLVLVLDQI YGDDYVEVGE
201: EQVHPSAVDL
001: MKGGLLVDDE FIHGEERSLT VRKTSLFFAG DGFTVYDCKG SLVFRVDSYG GPNTRDTDEV VLMDAHGRCL LTLRRKRPSL RRRWEGYLGE RSDGQKPIFG
101: VRRSSIIGRN SVTVEVYGDY QCSEYLIEGS FGARNCTVVE AETRRKVAEI RRKVDASTNV MLGKDVFSLN VKPGFDGAFA MGLVLVLDQI YGDDLLEVGE
201: EQVHPSAEDL
101: VRRSSIIGRN SVTVEVYGDY QCSEYLIEGS FGARNCTVVE AETRRKVAEI RRKVDASTNV MLGKDVFSLN VKPGFDGAFA MGLVLVLDQI YGDDLLEVGE
201: EQVHPSAEDL
Arabidopsis Description
Protein LURP-one-related 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSC7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.