Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24069 | Canola | cytosol | 93.92 | 79.43 |
| CDY71164 | Canola | cytosol, extracellular, peroxisome | 88.51 | 68.23 |
| Bra039696.1-P | Field mustard | cytosol | 91.89 | 67.66 |
| CDY24068 | Canola | peroxisome | 90.54 | 66.67 |
| CDY24067 | Canola | cytosol | 90.54 | 66.67 |
| AT1G53875.1 | Thale cress | cytosol, mitochondrion, nucleus, peroxisome | 73.65 | 47.81 |
| AT1G53870.3 | Thale cress | cytosol, nucleus, peroxisome | 66.22 | 45.16 |
| CDY36612 | Canola | cytosol | 35.14 | 38.24 |
| CDY33238 | Canola | cytosol, peroxisome, plastid | 54.73 | 35.22 |
| AT1G53890.3 | Thale cress | cytosol | 56.76 | 34.57 |
| CDX75761 | Canola | cytosol | 53.38 | 34.35 |
| CDY67855 | Canola | peroxisome | 52.03 | 33.48 |
| CDX82489 | Canola | cytosol | 52.03 | 33.48 |
| KRH47711 | Soybean | peroxisome | 36.49 | 27.41 |
| KRH06275 | Soybean | peroxisome | 36.49 | 26.87 |
| TraesCS2A01G113800.1 | Wheat | plastid | 32.43 | 22.97 |
| CDY49893 | Canola | cytosol | 29.05 | 22.51 |
| HORVU2Hr1G019720.1 | Barley | plastid | 31.76 | 22.49 |
| TraesCS2B01G132800.1 | Wheat | plastid | 32.43 | 22.43 |
| TraesCS2D01G114400.1 | Wheat | plastid | 32.43 | 22.22 |
| EER99890 | Sorghum | plastid | 29.05 | 21.18 |
| Os07t0672600-00 | Rice | plastid | 31.76 | 20.52 |
| TraesCS4A01G142700.1 | Wheat | mitochondrion, plastid | 29.73 | 18.11 |
| HORVU6Hr1G081400.1 | Barley | mitochondrion | 30.41 | 17.79 |
| TraesCS4B01G155500.1 | Wheat | cytosol, mitochondrion | 29.73 | 17.6 |
| CDY60759 | Canola | cytosol | 22.97 | 17.44 |
| TraesCS4D01G168500.1 | Wheat | mitochondrion | 29.73 | 17.05 |
| Zm00001d029119_P001 | Maize | mitochondrion | 28.38 | 17.0 |
| CDX91482 | Canola | cytosol | 22.3 | 16.92 |
| CDY45367 | Canola | cytosol | 17.57 | 16.88 |
| KXG39402 | Sorghum | mitochondrion | 28.38 | 16.28 |
| CDY18377 | Canola | cytosol | 20.27 | 15.31 |
| CDX93313 | Canola | cytosol | 19.59 | 14.8 |
| CDY62436 | Canola | cytosol | 19.59 | 14.8 |
| CDY07715 | Canola | cytosol | 19.59 | 14.8 |
| CDY07714 | Canola | cytosol | 18.92 | 14.36 |
| CDY62435 | Canola | cytosol | 18.92 | 14.36 |
| CDX75845 | Canola | cytosol | 18.92 | 13.15 |
| CDY58464 | Canola | cytosol | 18.92 | 13.15 |
| CDY41119 | Canola | cytosol | 18.24 | 12.86 |
| CDY37567 | Canola | cytosol | 18.24 | 12.86 |
| CDY30113 | Canola | cytosol | 18.24 | 12.33 |
| CDX87294 | Canola | cytosol | 16.22 | 9.34 |
| GSMUA_Achr3P24000_001 | Banana | nucleus | 31.76 | 5.69 |
Protein Annotations
| EnsemblPlants:CDY36610 | EnsemblPlantsGene:GSBRNA2T00062318001 | Gene3D:3.20.90.20 | InterPro:IPR025659 | InterPro:IPR038595 | InterPro:LOR |
| InterPro:LOR_sf | InterPro:Tubby-like_C | PANTHER:PTHR31087 | PANTHER:PTHR31087:SF30 | PFAM:PF04525 | ProteinID:CDY36610 |
| ProteinID:CDY36610.1 | SEG:seg | SUPFAM:SSF54518 | UniParc:UPI0004EEA584 | UniProt:A0A078HE31 | MapMan:35.1 |
Description
BnaC06g06630DBnaC06g06630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HE31]
Coordinates
chrLK032379:+:138803..139477
Molecular Weight (calculated)
16460.9 Da
IEP (calculated)
9.195
GRAVY (calculated)
-0.216
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQIHPVQAV PVDSGIGEVK SSPYVTTEQE SFTIWMRSLS CGCNSTGTRF RLRKNFKISS RGSSSSYKVV MEPNKDDRQS CYKILNHASV FTIEDGPGRL
101: LAEVKKKRSN VNGLDFGEDI LTMVVEPQVD HSFIMGIVIA YGLLKSKL
101: LAEVKKKRSN VNGLDFGEDI LTMVVEPQVD HSFIMGIVIA YGLLKSKL
001: MQIYNPISPV KTMVKIYPHL AFPVDMDVVQ DKILPYLTTE QERFTIWMKS LVFNSKGCTV FDSKGNLIYR VDNYDSKSWS NEVYFMDLNG KILFTLRQKK
101: LGFFKSWEGY NSTGTRFRLR KIFKILPRES SSSYKVVMGS RIVDGDQQSC YKIVNRGSVF AIKDGSGRLM AEVKNKLSDI SGLDLGDDVL TMMVEPQLDH
201: SLIMGIVIAY KLTKCKL
101: LGFFKSWEGY NSTGTRFRLR KIFKILPRES SSSYKVVMGS RIVDGDQQSC YKIVNRGSVF AIKDGSGRLM AEVKNKLSDI SGLDLGDDVL TMMVEPQLDH
201: SLIMGIVIAY KLTKCKL
Arabidopsis Description
Protein LURP-one-related 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67XV7]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.