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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 2
  • cytosol 3
  • plasma membrane 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol, plasma membrane, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G53870.3 Thale cress cytosol, nucleus, peroxisome 77.78 87.1
AT1G53875.1 Thale cress cytosol, mitochondrion, nucleus, peroxisome 61.32 65.35
CDY71164 Canola cytosol, extracellular, peroxisome 49.38 62.5
CDY24068 Canola peroxisome 49.79 60.2
Bra039697.1-P Field mustard cytosol, extracellular, peroxisome 48.97 59.2
Bra039696.1-P Field mustard cytosol 48.56 58.71
Bra039698.1-P Field mustard cytosol 48.15 58.21
CDY24067 Canola cytosol 48.15 58.21
CDY36610 Canola cytosol 34.57 56.76
CDY24069 Canola cytosol 39.92 55.43
AT3G14260.1 Thale cress cytosol 48.15 50.87
CDY36612 Canola cytosol 25.93 46.32
KRH47711 Soybean peroxisome 30.45 37.56
KRH06275 Soybean peroxisome 30.86 37.31
Os07t0672600-00 Rice plastid 28.4 30.13
TraesCS2A01G113800.1 Wheat plastid 24.69 28.71
HORVU2Hr1G019720.1 Barley plastid 24.28 28.23
TraesCS2D01G114400.1 Wheat plastid 24.69 27.78
EER99890 Sorghum plastid 23.05 27.59
TraesCS2B01G132800.1 Wheat plastid 24.28 27.57
AT1G63410.2 Thale cress cytosol 24.28 27.44
TraesCS4A01G142700.1 Wheat mitochondrion, plastid 25.1 25.1
TraesCS4B01G155500.1 Wheat cytosol, mitochondrion 25.1 24.4
Zm00001d029119_P001 Maize mitochondrion 24.69 24.29
HORVU6Hr1G081400.1 Barley mitochondrion 25.1 24.11
TraesCS4D01G168500.1 Wheat mitochondrion 25.1 23.64
KXG39402 Sorghum mitochondrion 24.69 23.26
AT2G38640.1 Thale cress cytosol 18.52 22.96
AT1G80120.1 Thale cress cytosol 19.34 22.38
AT3G15810.1 Thale cress cytosol 18.52 20.45
AT5G41590.1 Thale cress cytosol 17.7 19.46
GSMUA_Achr3P24000_001 Banana nucleus 29.22 8.6
Protein Annotations
Gene3D:3.20.90.20MapMan:35.1EntrezGene:841824EntrezGene:841827ProteinID:AEE33019.2ArrayExpress:AT1G53890
EnsemblPlantsGene:AT1G53890RefSeq:AT1G53890TAIR:AT1G53890RefSeq:AT1G53890-TAIR-GEnsemblPlants:AT1G53890.3TAIR:AT1G53890.3
UniProt:F4HTE5InterPro:IPR025659InterPro:IPR038595InterPro:LORInterPro:LOR_sfRefSeq:NP_001185218.2
PFAM:PF04525PO:PO:0000293PANTHER:PTHR31087PANTHER:PTHR31087:SF30SUPFAM:SSF54518InterPro:Tubby-like_C
UniParc:UPI0008491AECSEG:seg::::
Description
Protein of unknown function (DUF567) [Source:TAIR;Acc:AT1G53890]
Coordinates
chr1:+:20124843..20126109
Molecular Weight (calculated)
27621.5 Da
IEP (calculated)
9.610
GRAVY (calculated)
-0.171
Length
243 amino acids
Sequence
(BLAST)
001: MQIYNPISPV KTMVKIYPHL AFPVDMDVVQ DKILPYLTTE QERFTIWMKS LVFNSKGCTV FDSKGNLIYR VDNYDSKSWS NEVYFMDLNG KILFTLRYNS
101: TGTRFRLRKI FKILPRESSS SYKVVMGSRI VDGDQQSCYK IVNRGSVFAI KDGSGRLMAE VKNKLSDISG LDLGDDVLTM MVVILKNAEK LGIVHPHKSQ
201: NNQSVLSFFI FCLLPNPNRA PWNSTDPTSM FEQAQAAIQS SLS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.