Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G80120.1 | CDX73678 | AT3G51920.1 | 17360592 |
| AT1G80120.1 | CDX95314 | AT3G51920.1 | 17360592 |
| AT1G80120.1 | CDY23174 | AT3G51920.1 | 17360592 |
| AT1G80120.1 | CDX92401 | AT5G21274.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41119 | Canola | cytosol | 76.65 | 93.81 |
| CDY37567 | Canola | cytosol | 76.65 | 93.81 |
| AT1G80120.1 | Thale cress | cytosol | 72.76 | 89.05 |
| Bra035195.1-P | Field mustard | cytosol | 65.37 | 80.0 |
| VIT_09s0002g06920.t01 | Wine grape | cytosol | 52.14 | 64.73 |
| CDX75845 | Canola | cytosol | 51.75 | 62.44 |
| CDY58464 | Canola | cytosol | 51.36 | 61.97 |
| KRH47444 | Soybean | cytosol | 52.53 | 61.64 |
| CDY30113 | Canola | cytosol | 52.14 | 61.19 |
| KRH23583 | Soybean | cytosol | 51.36 | 60.0 |
| KRH44464 | Soybean | cytosol | 50.97 | 59.82 |
| KRH09722 | Soybean | cytosol | 50.97 | 59.82 |
| GSMUA_Achr3P13680_001 | Banana | cytosol | 25.68 | 50.38 |
| TraesCS3B01G340800.1 | Wheat | cytosol | 38.52 | 45.0 |
| HORVU3Hr1G075150.1 | Barley | cytosol | 38.13 | 44.75 |
| TraesCS3D01G306600.1 | Wheat | cytosol | 38.13 | 44.75 |
| TraesCS3A01G296300.1 | Wheat | cytosol | 37.74 | 44.09 |
| Os01t0771000-01 | Rice | cytosol | 37.74 | 42.73 |
| EES03690 | Sorghum | cytosol | 36.19 | 41.7 |
| Zm00001d043318_P001 | Maize | cytosol | 36.19 | 41.7 |
| HORVU1Hr1G077760.1 | Barley | cytosol | 36.19 | 40.43 |
| Os05t0510100-01 | Rice | cytosol | 36.97 | 40.08 |
| CDY18377 | Canola | cytosol | 30.35 | 39.8 |
| CDX93313 | Canola | cytosol | 30.35 | 39.8 |
| CDX91482 | Canola | cytosol | 29.96 | 39.49 |
| TraesCS1B01G341900.1 | Wheat | cytosol | 35.8 | 39.15 |
| TraesCS1D01G330600.1 | Wheat | cytosol | 35.8 | 38.98 |
| Zm00001d000310_P001 | Maize | cytosol | 36.58 | 38.52 |
| CDY62435 | Canola | cytosol | 29.18 | 38.46 |
| CDY60759 | Canola | cytosol | 29.18 | 38.46 |
| CDY62436 | Canola | cytosol | 29.18 | 38.27 |
| EES18481 | Sorghum | cytosol | 35.8 | 38.17 |
| CDY07714 | Canola | cytosol | 28.79 | 37.95 |
| TraesCS1A01G328100.1 | Wheat | cytosol | 35.8 | 37.86 |
| CDY07715 | Canola | cytosol | 28.79 | 37.76 |
| CDY33238 | Canola | cytosol, peroxisome, plastid | 22.96 | 25.65 |
| CDY67855 | Canola | peroxisome | 22.57 | 25.22 |
| CDY49893 | Canola | cytosol | 18.68 | 25.13 |
| CDX75761 | Canola | cytosol | 21.4 | 23.91 |
| CDX82489 | Canola | cytosol | 21.01 | 23.48 |
| CDY24068 | Canola | peroxisome | 18.29 | 23.38 |
| CDY71164 | Canola | cytosol, extracellular, peroxisome | 17.12 | 22.92 |
| CDY24067 | Canola | cytosol | 17.9 | 22.89 |
| CDY45367 | Canola | cytosol | 13.62 | 22.73 |
| CDY24069 | Canola | cytosol | 13.62 | 20.0 |
| CDY36612 | Canola | cytosol | 10.12 | 19.12 |
| CDY36610 | Canola | cytosol | 9.34 | 16.22 |
Protein Annotations
| EnsemblPlants:CDX87294 | EnsemblPlantsGene:GSBRNA2T00146256001 | Gene3D:3.20.90.20 | InterPro:IPR025659 | InterPro:IPR038595 | InterPro:LOR |
| InterPro:LOR_sf | InterPro:Tubby-like_C | PANTHER:PTHR31087 | PANTHER:PTHR31087:SF2 | PFAM:PF04525 | ProteinID:CDX87294 |
| ProteinID:CDX87294.1 | SEG:seg | SUPFAM:SSF54518 | UniParc:UPI0004EEBE85 | MapMan:35.1 | : |
Description
BnaA07g35790D
Coordinates
chrLK031850:+:50011..50979
Molecular Weight (calculated)
29278.7 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.384
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGLLVDNK FSHGQDKNLT VRKTSLFFAG DGFTVYDCKG TLVFRVDSYG GPNNRDTDEV VLMDAHGRCL LTLRRKRPSL RRRWEGYLGE RTDGQKPIFG
101: VRRSSMIGRN SVTVEVYAEY ECNEYLIEGN FGQRSCTVVE AETRRKVAEI RRKVDASTNV MLGKDVFSLN VKAGFDGAFA MGLVLVLDQI YGDDYVEVGE
201: EQVHPYAEDH YNFFFSFLFG WEPKTSGNNT NIYLVVSFCR LERNDLDKYF SSVTCCE
101: VRRSSMIGRN SVTVEVYAEY ECNEYLIEGN FGQRSCTVVE AETRRKVAEI RRKVDASTNV MLGKDVFSLN VKAGFDGAFA MGLVLVLDQI YGDDYVEVGE
201: EQVHPYAEDH YNFFFSFLFG WEPKTSGNNT NIYLVVSFCR LERNDLDKYF SSVTCCE
001: MKGGLLVDDE FIHGEERSLT VRKTSLFFAG DGFTVYDCKG SLVFRVDSYG GPNTRDTDEV VLMDAHGRCL LTLRRKRPSL RRRWEGYLGE RSDGQKPIFG
101: VRRSSIIGRN SVTVEVYGDY QCSEYLIEGS FGARNCTVVE AETRRKVAEI RRKVDASTNV MLGKDVFSLN VKPGFDGAFA MGLVLVLDQI YGDDLLEVGE
201: EQVHPSAEDL
101: VRRSSIIGRN SVTVEVYGDY QCSEYLIEGS FGARNCTVVE AETRRKVAEI RRKVDASTNV MLGKDVFSLN VKPGFDGAFA MGLVLVLDQI YGDDLLEVGE
201: EQVHPSAEDL
Arabidopsis Description
Protein LURP-one-related 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSC7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.