Factsheet for VIT_09s0002g06920.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80120.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT1G80120.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT1G80120.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT1G80120.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09722	Soybean	cytosol	71.01	67.12
KRH23583	Soybean	cytosol	71.01	66.82
AT1G80120.1	Thale cress	cytosol	67.15	66.19
KRH47444	Soybean	cytosol	69.57	65.75
Bra008497.1-P	Field mustard	cytosol	66.67	65.71
CDY37567	Canola	cytosol	66.67	65.71
CDY41119	Canola	cytosol	66.67	65.71
KRH44464	Soybean	cytosol	67.63	63.93
GSMUA_Achr3P13680_001	Banana	cytosol	35.27	55.73
Bra035195.1-P	Field mustard	cytosol	53.14	52.38
CDX87294	Canola	cytosol	64.73	52.14
HORVU3Hr1G075150.1	Barley	cytosol	50.72	47.95
TraesCS3B01G340800.1	Wheat	cytosol	50.24	47.27
TraesCS3A01G296300.1	Wheat	cytosol	50.24	47.27
TraesCS3D01G306600.1	Wheat	cytosol	49.76	47.03
Zm00001d043318_P001	Maize	cytosol	47.83	44.39
EES03690	Sorghum	cytosol	47.83	44.39
Os01t0771000-01	Rice	cytosol	47.83	43.61
HORVU1Hr1G077760.1	Barley	cytosol	46.86	42.17
TraesCS1B01G341900.1	Wheat	cytosol	46.38	40.85
TraesCS1D01G330600.1	Wheat	cytosol	46.38	40.68
Os05t0510100-01	Rice	cytosol	46.38	40.51
EES18481	Sorghum	cytosol	46.86	40.25
Zm00001d000310_P001	Maize	cytosol	47.34	40.16
TraesCS1A01G328100.1	Wheat	cytosol	46.38	39.51
VIT_08s0032g00760.t01	Wine grape	cytosol	38.16	39.5
VIT_08s0056g00180.t01	Wine grape	cytosol	38.65	37.04
VIT_02s0025g00500.t01	Wine grape	cytosol	37.2	35.0
VIT_08s0056g00130.t01	Wine grape	cytosol	33.33	28.99
VIT_02s0025g03730.t01	Wine grape	cytosol	27.05	27.72
VIT_02s0025g03740.t01	Wine grape	plastid	26.57	26.7
VIT_02s0025g03750.t01	Wine grape	cytosol	26.09	25.71

Protein Annotations

EntrezGene:100259317	wikigene:100259317	Gene3D:3.20.90.20	MapMan:35.1	EMBL:AM464824	ProteinID:CAN65825
ProteinID:CAN65825.1	ProteinID:CBI36329	ProteinID:CBI36329.3	UniProt:D7U133	EMBL:FN596494	InterPro:IPR025659
InterPro:IPR038595	EntrezGene:LOC100259317	wikigene:LOC100259317	InterPro:LOR	InterPro:LOR_sf	PFAM:PF04525
PANTHER:PTHR31087	PANTHER:PTHR31087:SF2	SUPFAM:SSF54518	InterPro:Tubby-like_C	UniParc:UPI00015CD0D0	ArrayExpress:VIT_09s0002g06920
EnsemblPlantsGene:VIT_09s0002g06920	EnsemblPlants:VIT_09s0002g06920.t01	unigene:Vvi.12922	RefSeq:XP_002266582	RefSeq:XP_002266582.1	:

Description

No Description!

Coordinates

chr9:-:6834937..6836356

Molecular Weight (calculated)

22881.3 Da

IEP (calculated)

4.736

GRAVY (calculated)

-0.149

Length

207 amino acids

Sequence
(BLAST)

001: MKAGAVVEEG FIYEEEIQLT VFKTSLFFTG DGFTVYDPKG TLVFRVDSYE PDARDKGELI LMDASGRCLL TVRRKRPSLH QRWEGFLGEG IDGKKPIFSV
101: KRSSIIGRSG VTVEMYSNPG EDYQIEGSFS HRCCTIFNAA KESVAEIRRK VDASTHVMLG KDVFTLCLKP GFGGAFAMGL VLVLDQISDD YEDDGLQVDP
201: AANDLSL

Best Arabidopsis Sequence Match ( AT3G15810.1 )
(BLAST)

001: MELVEETIPK EGKKMGERIV VDKAYLYQED KPLTVCKTSL FYTGDGFAAY DCRGDIIFRV DSYGPDTRDN DEIVLMDATG KCLLTVKRKR PTLHQRWEGF
101: LGERSEGQKP IFSVRRSSII GRCTMEVEVY DGTGEEYIID GDFSQRSCLI YDTKKCTVAE IKRKVDASTN VMLGRDVFTL EIKPGFDGAF AMGLVVVLDQ
201: INGDDPVEIG DEQVHPFVED

Arabidopsis Description

Protein LURP-one-related 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.