Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- cytosol 2
- peroxisome 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0025g03730.t01 | Wine grape | cytosol | 91.75 | 93.56 |
| VIT_02s0025g03750.t01 | Wine grape | cytosol | 84.47 | 82.86 |
| PGSC0003DMT400032165 | Potato | cytosol | 48.06 | 57.23 |
| Solyc08g080760.1.1 | Tomato | mitochondrion | 53.4 | 55.28 |
| Solyc08g080770.2.1 | Tomato | plastid | 55.34 | 53.77 |
| PGSC0003DMT400007876 | Potato | plastid | 51.94 | 53.23 |
| Solyc12g056310.1.1 | Tomato | plastid | 50.49 | 52.79 |
| PGSC0003DMT400010898 | Potato | cytosol | 32.52 | 52.76 |
| PGSC0003DMT400032166 | Potato | plastid | 53.4 | 51.89 |
| Solyc08g080750.2.1 | Tomato | plastid | 50.49 | 51.49 |
| KRH27952 | Soybean | cytosol | 45.63 | 48.7 |
| PGSC0003DMT400014913 | Potato | plastid | 49.03 | 48.56 |
| KRH59852 | Soybean | cytosol | 46.12 | 48.47 |
| KRH77515 | Soybean | cytosol | 45.63 | 48.45 |
| Solyc08g007980.2.1 | Tomato | plastid | 48.06 | 47.6 |
| Bra027804.1-P | Field mustard | cytosol | 42.72 | 46.07 |
| CDY49893 | Canola | cytosol | 42.72 | 46.07 |
| PGSC0003DMT400012847 | Potato | cytosol | 29.13 | 45.45 |
| KRH41152 | Soybean | cytosol | 32.52 | 44.97 |
| HORVU2Hr1G019720.1 | Barley | plastid | 44.66 | 44.02 |
| TraesCS2A01G113800.1 | Wheat | plastid | 44.66 | 44.02 |
| TraesCS2B01G132800.1 | Wheat | plastid | 45.63 | 43.93 |
| EER99890 | Sorghum | plastid | 43.2 | 43.84 |
| TraesCS2D01G114400.1 | Wheat | plastid | 45.15 | 43.06 |
| CDY45367 | Canola | cytosol | 32.04 | 42.86 |
| AT1G63410.2 | Thale cress | cytosol | 43.2 | 41.4 |
| Os07t0672600-00 | Rice | plastid | 45.63 | 41.05 |
| TraesCS4A01G142700.1 | Wheat | mitochondrion, plastid | 42.72 | 36.21 |
| Zm00001d029119_P001 | Maize | mitochondrion | 42.23 | 35.22 |
| TraesCS4B01G155500.1 | Wheat | cytosol, mitochondrion | 42.72 | 35.2 |
| HORVU6Hr1G081400.1 | Barley | mitochondrion | 43.2 | 35.18 |
| TraesCS4D01G168500.1 | Wheat | mitochondrion | 43.2 | 34.5 |
| KXG39402 | Sorghum | mitochondrion | 41.75 | 33.33 |
| VIT_08s0032g00760.t01 | Wine grape | cytosol | 31.07 | 32.0 |
| VIT_08s0056g00180.t01 | Wine grape | cytosol | 32.52 | 31.02 |
| VIT_02s0025g00500.t01 | Wine grape | cytosol | 30.58 | 28.64 |
| VIT_09s0002g06920.t01 | Wine grape | cytosol | 26.7 | 26.57 |
| VIT_08s0056g00130.t01 | Wine grape | cytosol | 27.18 | 23.53 |
| GSMUA_Achr3P24000_001 | Banana | nucleus | 46.6 | 11.62 |
Protein Annotations
| EntrezGene:100251273 | wikigene:100251273 | Gene3D:3.20.90.20 | MapMan:35.1 | ProteinID:CCB58363 | ProteinID:CCB58363.1 |
| UniProt:F6HUE0 | EMBL:FN596251 | InterPro:IPR025659 | InterPro:IPR038595 | EntrezGene:LOC100251273 | wikigene:LOC100251273 |
| InterPro:LOR | InterPro:LOR_sf | PFAM:PF04525 | PANTHER:PTHR31087 | PANTHER:PTHR31087:SF25 | SUPFAM:SSF54518 |
| InterPro:Tubby-like_C | UniParc:UPI00015CD32A | ArrayExpress:VIT_02s0025g03740 | EnsemblPlantsGene:VIT_02s0025g03740 | EnsemblPlants:VIT_02s0025g03740.t01 | RefSeq:XP_002269469 |
| RefSeq:XP_002269469.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2:+:3242225..3242957
Molecular Weight (calculated)
22814.7 Da
IEP (calculated)
8.734
GRAVY (calculated)
-0.195
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKVHPQMPA AVPPPPPPPS DSCITSRRET FTLWMKSLVI QGNGYTVFNS DGEIVYRIDN YDKKCSSEVY LMDLQGKVLF TILQRKLHVF GRWEGYKCNG
101: SKADSQKPCF QVRKHCRILG GGSSCEVTVR PNEAQSCYYR IQGLAGKSTF KIVNSEGGVM AEVKQKQTSS GVVLGDDVLN LVVEPHVDHS LVMALVAVCG
201: LIHHRM
101: SKADSQKPCF QVRKHCRILG GGSSCEVTVR PNEAQSCYYR IQGLAGKSTF KIVNSEGGVM AEVKQKQTSS GVVLGDDVLN LVVEPHVDHS LVMALVAVCG
201: LIHHRM
001: MARVFPQAAI SSPYMSTERE TFTVWMKSLV YQTNGLTVYN SNGEITYRVE NYDKCSNEVH IMDLHGNILF TIRKKKLWLF GSWYVYRECG SFTSTEEVKP
101: CARIKRSSIR DGDWEVRDET NEVFWILRFD PKFAFQIIDI HGNIIAQVKP KQSSNGITLG EDVLTLEVKP RVDHSLVVTL VTVYGLIKGV V
101: CARIKRSSIR DGDWEVRDET NEVFWILRFD PKFAFQIIDI HGNIIAQVKP KQSSNGITLG EDVLTLEVKP RVDHSLVVTL VTVYGLIKGV V
Arabidopsis Description
Protein LURP-one-related 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH27]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.