Factsheet for PGSC0003DMT400014913

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007980.2.1	Tomato	plastid	96.15	96.15
PGSC0003DMT400007876	Potato	plastid	69.71	72.14
PGSC0003DMT400012847	Potato	cytosol	39.42	62.12
VIT_02s0025g03730.t01	Wine grape	cytosol	50.48	51.98
VIT_02s0025g03740.t01	Wine grape	plastid	48.56	49.03
VIT_02s0025g03750.t01	Wine grape	cytosol	49.04	48.57
PGSC0003DMT400032166	Potato	plastid	47.6	46.7
Bra027804.1-P	Field mustard	cytosol	42.79	46.6
CDY49893	Canola	cytosol	42.79	46.6
PGSC0003DMT400032165	Potato	cytosol	37.5	45.09
KRH27952	Soybean	cytosol	41.83	45.08
KRH77515	Soybean	cytosol	41.35	44.33
PGSC0003DMT400010898	Potato	cytosol	25.96	42.52
KRH59852	Soybean	cytosol	39.42	41.84
CDY45367	Canola	cytosol	30.77	41.56
AT1G63410.2	Thale cress	cytosol	42.31	40.93
TraesCS2A01G113800.1	Wheat	plastid	38.46	38.28
HORVU2Hr1G019720.1	Barley	plastid	37.98	37.8
KRH41152	Soybean	cytosol	26.92	37.58
TraesCS2D01G114400.1	Wheat	plastid	38.46	37.04
TraesCS2B01G132800.1	Wheat	plastid	37.98	36.92
EER99890	Sorghum	plastid	34.62	35.47
Os07t0672600-00	Rice	plastid	38.94	35.37
TraesCS4A01G142700.1	Wheat	mitochondrion, plastid	38.46	32.92
HORVU6Hr1G081400.1	Barley	mitochondrion	39.42	32.41
TraesCS4B01G155500.1	Wheat	cytosol, mitochondrion	38.46	32.0
TraesCS4D01G168500.1	Wheat	mitochondrion	38.94	31.4
Zm00001d029119_P001	Maize	mitochondrion	35.58	29.96
KXG39402	Sorghum	mitochondrion	35.1	28.29
PGSC0003DMT400001705	Potato	cytosol	22.6	22.27
PGSC0003DMT400031740	Potato	plastid	24.52	21.7
PGSC0003DMT400030793	Potato	cytosol	17.31	16.9
GSMUA_Achr3P24000_001	Banana	nucleus	40.38	10.17

Protein Annotations

EnsemblPlants:PGSC0003DMT400014913	EnsemblPlantsGene:PGSC0003DMG400005818	EntrezGene:102596117	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595
InterPro:LOR	InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF25	PFAM:PF04525
PGSC:PGSC0003DMG400005818	RefSeq:XP_006352280.1	SEG:seg	SUPFAM:SSF54518	UniParc:UPI000295D7BE	UniProt:M1A532
MapMan:35.1	:	:	:	:	:

Description

GTP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005818]

Coordinates

chr8:-:4796340..4798095

Molecular Weight (calculated)

23424.0 Da

IEP (calculated)

8.256

GRAVY (calculated)

-0.281

Length

208 amino acids

Sequence
(BLAST)

001: MAKICPELML QQSSPSSSSS SSSPYIKSTR ETFTIWMKSL VFHGNGCTVF NSKGEIVFRV DNYQESCRDE VCIMDLKGQV HFSIKREKLR VFGRWNGYGS
101: CGEIKGRPLF QVKRNCDIFS RENIICNFGS CDENNVGINC YKIQQFDRNS SYKVTNSTGQ VVAEVKQKQS SRGFGYGEDV LTLEVEPNID HSLIVAFVIV
201: CGLIHGKL

Best Arabidopsis Sequence Match ( AT1G63410.1 )
(BLAST)

001: MARVFPQAAI SSPYMSTERE TFTVWMKSLV YQTNGLTVYN SNGEITYRVE NYDKCSNEVH IMDLHGNILF TIRKKKLWLF GSWYVYRECG SFTSTEEVKP
101: CARIKRSSIR DGDWEVRDET NEVFWILRFD PKFAFQIIDI HGNIIAQVKP KQSSNGITLG EDVLTLEVKP RVDHSLVVTL VTVYGLIKGV V

Arabidopsis Description

Protein LURP-one-related 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH27]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.