Factsheet for Solyc08g007980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014913	Potato	plastid	96.15	96.15
Solyc08g080750.2.1	Tomato	plastid	68.75	70.79
VIT_02s0025g03730.t01	Wine grape	cytosol	49.04	50.49
VIT_02s0025g03740.t01	Wine grape	plastid	47.6	48.06
VIT_02s0025g03750.t01	Wine grape	cytosol	48.08	47.62
Solyc08g080770.2.1	Tomato	plastid	47.12	46.23
Solyc08g080760.1.1	Tomato	mitochondrion	43.27	45.23
Solyc12g056310.1.1	Tomato	plastid	42.79	45.18
KRH27952	Soybean	cytosol	41.83	45.08
Bra027804.1-P	Field mustard	cytosol	41.35	45.03
CDY49893	Canola	cytosol	41.35	45.03
KRH77515	Soybean	cytosol	41.35	44.33
KRH59852	Soybean	cytosol	39.42	41.84
CDY45367	Canola	cytosol	29.33	39.61
AT1G63410.2	Thale cress	cytosol	40.87	39.53
KRH41152	Soybean	cytosol	26.92	37.58
TraesCS2A01G113800.1	Wheat	plastid	37.02	36.84
HORVU2Hr1G019720.1	Barley	plastid	36.54	36.36
TraesCS2D01G114400.1	Wheat	plastid	37.02	35.65
TraesCS2B01G132800.1	Wheat	plastid	36.54	35.51
Os07t0672600-00	Rice	plastid	38.46	34.93
EER99890	Sorghum	plastid	33.65	34.48
TraesCS4A01G142700.1	Wheat	mitochondrion, plastid	37.5	32.1
HORVU6Hr1G081400.1	Barley	mitochondrion	38.46	31.62
TraesCS4B01G155500.1	Wheat	cytosol, mitochondrion	37.5	31.2
TraesCS4D01G168500.1	Wheat	mitochondrion	37.98	30.62
Zm00001d029119_P001	Maize	mitochondrion	34.62	29.15
KXG39402	Sorghum	mitochondrion	34.13	27.52
Solyc03g116710.2.1	Tomato	cytosol	23.56	23.22
Solyc08g081680.1.1	Tomato	nucleus	25.0	22.51
Solyc09g005210.2.1	Tomato	nucleus	20.19	16.03
GSMUA_Achr3P24000_001	Banana	nucleus	39.9	10.05

Protein Annotations

EnsemblPlants:Solyc08g007980.2.1	EnsemblPlantsGene:Solyc08g007980.2	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595	InterPro:LOR
InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF25	PFAM:PF04525	SEG:seg
SUPFAM:SSF54518	UniParc:UPI000276CA57	UniProt:K4CIT3	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr8:-:2480024..2481880

Molecular Weight (calculated)

23402.1 Da

IEP (calculated)

8.256

GRAVY (calculated)

-0.196

Length

208 amino acids

Sequence
(BLAST)

001: MAKICPELLL QQSSPSSSSS SPSPFIKSIR ETFTIWMKSL IFHGNGCTIF NSKGEIVFRV DNYQESCRDE VCIMDLKGQV LFSIKREKLR VFGRWNGYGS
101: CGEIKGRPLF QVKRNCDIFS RENVICNFGS CDENNVGINC YKIQQFDRNS SYKVTNSTGQ VVAEVKQKQS SRGFGYGEDV LTLEVEPNID HSLIVAFVIV
201: CGLIHGKL

Best Arabidopsis Sequence Match ( AT1G63410.1 )
(BLAST)

001: MARVFPQAAI SSPYMSTERE TFTVWMKSLV YQTNGLTVYN SNGEITYRVE NYDKCSNEVH IMDLHGNILF TIRKKKLWLF GSWYVYRECG SFTSTEEVKP
101: CARIKRSSIR DGDWEVRDET NEVFWILRFD PKFAFQIIDI HGNIIAQVKP KQSSNGITLG EDVLTLEVKP RVDHSLVVTL VTVYGLIKGV V

Arabidopsis Description

Protein LURP-one-related 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH27]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.