Factsheet for Solyc12g056310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010898	Potato	cytosol	59.39	92.13
Solyc08g080760.1.1	Tomato	mitochondrion	55.84	55.28
Solyc08g080770.2.1	Tomato	plastid	57.87	53.77
VIT_02s0025g03730.t01	Wine grape	cytosol	53.3	51.98
VIT_02s0025g03740.t01	Wine grape	plastid	52.79	50.49
VIT_02s0025g03750.t01	Wine grape	cytosol	52.28	49.05
Solyc08g080750.2.1	Tomato	plastid	50.25	49.01
Bra027804.1-P	Field mustard	cytosol	44.67	46.07
CDY49893	Canola	cytosol	44.67	46.07
KRH59852	Soybean	cytosol	44.67	44.9
KRH27952	Soybean	cytosol	42.64	43.52
Solyc08g007980.2.1	Tomato	plastid	45.18	42.79
KRH77515	Soybean	cytosol	41.12	41.75
CDY45367	Canola	cytosol	32.49	41.56
KRH41152	Soybean	cytosol	30.96	40.94
AT1G63410.2	Thale cress	cytosol	44.67	40.93
HORVU2Hr1G019720.1	Barley	plastid	39.59	37.32
TraesCS2A01G113800.1	Wheat	plastid	39.59	37.32
TraesCS2D01G114400.1	Wheat	plastid	40.1	36.57
TraesCS2B01G132800.1	Wheat	plastid	39.09	35.98
EER99890	Sorghum	plastid	37.06	35.96
Os07t0672600-00	Rice	plastid	41.62	35.81
TraesCS4A01G142700.1	Wheat	mitochondrion, plastid	36.04	29.22
HORVU6Hr1G081400.1	Barley	mitochondrion	36.55	28.46
Zm00001d029119_P001	Maize	mitochondrion	35.53	28.34
TraesCS4B01G155500.1	Wheat	cytosol, mitochondrion	35.53	28.0
TraesCS4D01G168500.1	Wheat	mitochondrion	36.55	27.91
KXG39402	Sorghum	mitochondrion	36.55	27.91
Solyc03g116710.2.1	Tomato	cytosol	24.87	23.22
Solyc08g081680.1.1	Tomato	nucleus	26.9	22.94
Solyc09g005210.2.1	Tomato	nucleus	24.37	18.32
GSMUA_Achr3P24000_001	Banana	nucleus	38.58	9.2

Protein Annotations

EnsemblPlants:Solyc12g056310.1.1	EnsemblPlantsGene:Solyc12g056310.1	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595	InterPro:LOR
InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF25	PFAM:PF04525	SEG:seg
SUPFAM:SSF54518	UniParc:UPI0002769EAC	UniProt:K4DFW2	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr12:+:62280777..62281663

Molecular Weight (calculated)

22458.6 Da

IEP (calculated)

9.922

GRAVY (calculated)

-0.071

Length

197 amino acids

Sequence
(BLAST)

001: MARIYPQTSS SSSCSSICMT KYVTTKRETF TLWMKSLVFH GNGCAVFDSK GQLVYRIDNY SKKCSKQVHL MDLHGTILFS LRKKKLSIFG HWNGYKMDEE
101: TPYFQVKKIG NLFIGDLNYG VIFGCDTNNY RIIALRGKLG FKIINKENRL IAEVKQKQSS SAVKFGDDVL SLVVEPYVDH SLVMALVTVY GLIRHML

Best Arabidopsis Sequence Match ( AT1G63410.1 )
(BLAST)

001: MARVFPQAAI SSPYMSTERE TFTVWMKSLV YQTNGLTVYN SNGEITYRVE NYDKCSNEVH IMDLHGNILF TIRKKKLWLF GSWYVYRECG SFTSTEEVKP
101: CARIKRSSIR DGDWEVRDET NEVFWILRFD PKFAFQIIDI HGNIIAQVKP KQSSNGITLG EDVLTLEVKP RVDHSLVVTL VTVYGLIKGV V

Arabidopsis Description

Protein LURP-one-related 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH27]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.