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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • cytosol 1
  • nucleus 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400030793 Potato cytosol 72.9 89.67
VIT_08s0056g00130.t01 Wine grape cytosol 43.51 47.9
Os12t0120500-01 Rice plastid 38.55 44.3
Os11t0121000-00 Rice plastid 38.55 44.1
GSMUA_Achr11P... Banana cytosol 32.44 41.46
GSMUA_Achr7P21840_001 Banana cytosol 31.3 39.81
EES09156 Sorghum plastid 37.02 38.19
Zm00001d023305_P001 Maize plastid 38.55 38.11
TraesCS5B01G143700.1 Wheat plastid 38.17 37.88
TraesCS5A01G144800.1 Wheat nucleus 34.35 37.66
Zm00001d005038_P001 Maize plastid 36.64 37.65
TraesCS5D01G147400.1 Wheat plastid 37.79 37.64
HORVU5Hr1G046140.1 Barley mitochondrion 34.35 37.04
TraesCS5B01G143600.1 Wheat mitochondrion 34.73 36.69
TraesCS5D01G147500.1 Wheat nucleus 34.35 36.0
Zm00001d044670_P001 Maize nucleus 37.79 35.48
Zm00001d052373_P001 Maize plastid 34.73 34.6
EES09154 Sorghum plastid 35.5 32.52
Solyc03g116710.2.1 Tomato cytosol 25.95 32.23
GSMUA_Achr4P02400_001 Banana cytosol 29.39 32.08
EES15616 Sorghum plastid 37.4 31.41
TraesCS5A01G145000.1 Wheat nucleus, plastid 37.79 27.73
Solyc08g081680.1.1 Tomato nucleus 23.28 26.41
HORVU5Hr1G046160.1 Barley mitochondrion 38.17 26.32
Solyc08g080750.2.1 Tomato plastid 19.47 25.25
Solyc12g056310.1.1 Tomato plastid 18.32 24.37
Solyc08g080770.2.1 Tomato plastid 19.47 24.06
Solyc08g080760.1.1 Tomato mitochondrion 17.18 22.61
Solyc08g007980.2.1 Tomato plastid 16.03 20.19
Protein Annotations
EnsemblPlants:Solyc09g005210.2.1EnsemblPlantsGene:Solyc09g005210.2Gene3D:3.20.90.20InterPro:IPR025659InterPro:IPR038595InterPro:LOR
InterPro:LOR_sfInterPro:Tubby-like_CPANTHER:PTHR31087PANTHER:PTHR31087:SF26PFAM:PF04525SUPFAM:SSF54518
UniParc:UPI000276AF1EUniProt:K4CQ11MapMan:35.1:::
Description
No Description!
Coordinates
chr9:+:172167..173177
Molecular Weight (calculated)
29808.0 Da
IEP (calculated)
10.392
GRAVY (calculated)
-0.477
Length
262 amino acids
Sequence
(BLAST)
001: MSKIHPSYHP KILRRKRLVY NKDDDGEYNN NNRLLPPRVI TSRPRVDSPS IFTVWKKSSM SFQGTDGFTV FDKQGRLVFR VDNYTRRKNR AIASRGSRSG
101: GLVLMDAQGK PLLTLRPQMN AQLQYEWNGY RGGEDDDGST PLFVMRKPPS SLFAMMGASM TTTSCQAQVF VGMDMKKKPN YRVEGSFRRR TCNITNSDGH
201: IIANLSRKVA NATTHTTILI SDDVFSLMIQ PGFEPHIFMA FVIILDRMYP NSYTPLICSE CN
Best Arabidopsis Sequence Match ( AT1G80120.1 )
(BLAST)
001: MKGGLLVDDE FIHGEERSLT VRKTSLFFAG DGFTVYDCKG SLVFRVDSYG GPNTRDTDEV VLMDAHGRCL LTLRRKRPSL RRRWEGYLGE RSDGQKPIFG
101: VRRSSIIGRN SVTVEVYGDY QCSEYLIEGS FGARNCTVVE AETRRKVAEI RRKVDASTNV MLGKDVFSLN VKPGFDGAFA MGLVLVLDQI YGDDLLEVGE
201: EQVHPSAEDL
Arabidopsis Description
Protein LURP-one-related 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSC7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.