Factsheet for GSMUA_Achr4P02400_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	59.58	69.76
GSMUA_Achr7P21840_001	Banana	cytosol	56.67	66.02
VIT_08s0056g00130.t01	Wine grape	cytosol	40.83	41.18
Os11t0121000-00	Rice	plastid	39.17	41.05
Os12t0120500-01	Rice	plastid	38.75	40.79
TraesCS5A01G144800.1	Wheat	nucleus	40.0	40.17
EES09156	Sorghum	plastid	42.5	40.16
TraesCS5D01G147500.1	Wheat	nucleus	40.42	38.8
TraesCS5B01G143600.1	Wheat	mitochondrion	40.0	38.71
HORVU5Hr1G046140.1	Barley	mitochondrion	39.17	38.68
TraesCS5D01G147400.1	Wheat	plastid	42.08	38.4
Zm00001d005038_P001	Maize	plastid	40.42	38.04
TraesCS5B01G143700.1	Wheat	plastid	41.25	37.5
Zm00001d052373_P001	Maize	plastid	40.42	36.88
EES09154	Sorghum	plastid	41.25	34.62
Zm00001d023305_P001	Maize	plastid	37.92	34.34
Zm00001d044670_P001	Maize	nucleus	37.5	32.26
EES15616	Sorghum	plastid	40.83	31.41
GSMUA_Achr3P13680_001	Banana	cytosol	16.67	30.53
PGSC0003DMT400030793	Potato	cytosol	27.08	30.52
TraesCS5A01G145000.1	Wheat	nucleus, plastid	43.75	29.41
Solyc09g005210.2.1	Tomato	nucleus	32.08	29.39
HORVU5Hr1G046160.1	Barley	mitochondrion	45.0	28.42
GSMUA_Achr7P21880_001	Banana	cytosol	22.5	26.73
GSMUA_Achr6P32380_001	Banana	cytosol	21.25	26.02
GSMUA_Achr4P02410_001	Banana	cytosol, peroxisome, plastid	22.08	25.48
GSMUA_Achr11P...	Banana	cytosol	20.0	24.24
GSMUA_Achr6P15880_001	Banana	plastid	19.58	23.15
GSMUA_Achr5P07550_001	Banana	cytosol	20.42	23.0
GSMUA_Achr10P...	Banana	plastid	20.0	22.97
GSMUA_Achr11P...	Banana	cytosol	22.08	22.55
GSMUA_Achr3P09620_001	Banana	nucleus	18.33	20.66
GSMUA_Achr9P16860_001	Banana	cytosol	19.58	16.04
GSMUA_Achr3P24000_001	Banana	nucleus	21.25	6.17

Protein Annotations

EnsemblPlants:GSMUA_Achr4P02400_001	EnsemblPlants:GSMUA_Achr4T02400_001	EnsemblPlantsGene:GSMUA_Achr4G02400_001	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595
InterPro:LOR	InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF26	PFAM:PF04525
SUPFAM:SSF54518	UniParc:UPI000294D370	UniProt:M0SKF7	MapMan:35.2	:	:

Description

DUF567 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G02400_001]

Coordinates

chr4:+:2125640..2127998

Molecular Weight (calculated)

27532.9 Da

IEP (calculated)

8.991

GRAVY (calculated)

-0.582

Length

240 amino acids

Sequence
(BLAST)

001: MRKHCSLIAR TDFPMTEKHK GLGTAIFYSI RSCFAAKSRV HPAPRKIDDE EVATTTTNSP SVWTVWKKSS MGFHGTDGFS IYDGMGRLSF RLDNYSRKRK
101: CFAGELLLMD GNGKAVVTLR PQVCDRWSGF RGEDGRETDC RSTHVFDIRR RSVLQSCDET EVLMDSTPDH KLPDFRTEGC FRRRNCKIMD RNGDEVTRIS
201: RNKENYSVAP RDHVFSLIIQ PNKESELMAA FLVLMDRICT

Best Arabidopsis Sequence Match ( AT3G15810.1 )
(BLAST)

001: MELVEETIPK EGKKMGERIV VDKAYLYQED KPLTVCKTSL FYTGDGFAAY DCRGDIIFRV DSYGPDTRDN DEIVLMDATG KCLLTVKRKR PTLHQRWEGF
101: LGERSEGQKP IFSVRRSSII GRCTMEVEVY DGTGEEYIID GDFSQRSCLI YDTKKCTVAE IKRKVDASTN VMLGRDVFTL EIKPGFDGAF AMGLVVVLDQ
201: INGDDPVEIG DEQVHPFVED

Arabidopsis Description

Protein LURP-one-related 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.