Factsheet for GSMUA_Achr5P07550_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P09620_001	Banana	nucleus	78.4	78.4
GSMUA_Achr6P15880_001	Banana	plastid	69.01	72.41
GSMUA_Achr6P32380_001	Banana	cytosol	66.2	71.94
VIT_08s0032g00760.t01	Wine grape	cytosol	58.69	62.5
VIT_08s0056g00180.t01	Wine grape	cytosol	60.56	59.72
GSMUA_Achr11P...	Banana	cytosol	55.4	59.6
GSMUA_Achr9P16860_001	Banana	cytosol	80.75	58.7
GSMUA_Achr4P02410_001	Banana	cytosol, peroxisome, plastid	57.28	58.65
GSMUA_Achr7P21880_001	Banana	cytosol	55.4	58.42
GSMUA_Achr10P...	Banana	plastid	52.11	53.11
GSMUA_Achr11P...	Banana	cytosol	56.34	51.06
CDX91482	Canola	cytosol	45.54	49.74
CDY07715	Canola	cytosol	45.54	49.49
CDY62436	Canola	cytosol	45.54	49.49
CDY07714	Canola	cytosol	45.07	49.23
CDY62435	Canola	cytosol	45.07	49.23
Bra005092.1-P	Field mustard	cytosol	45.07	49.23
KRH09578	Soybean	cytosol	47.89	49.04
Bra000079.1-P	Field mustard	cytosol	45.07	48.98
CDY18377	Canola	cytosol	45.07	48.98
Bra017111.1-P	Field mustard	cytosol	45.07	48.98
AT2G38640.1	Thale cress	cytosol	45.07	48.98
Bra000080.1-P	Field mustard	cytosol	44.6	48.72
CDX93313	Canola	cytosol	44.6	48.47
CDY60759	Canola	cytosol	44.13	48.21
GSMUA_Achr3P13680_001	Banana	cytosol	22.07	35.88
GSMUA_Achr7P21840_001	Banana	cytosol	28.64	29.61
GSMUA_Achr11P...	Banana	cytosol	27.23	28.29
GSMUA_Achr4P02400_001	Banana	cytosol	23.0	20.42
GSMUA_Achr3P24000_001	Banana	nucleus	34.27	8.84

Protein Annotations

EnsemblPlants:GSMUA_Achr5P07550_001	EnsemblPlants:GSMUA_Achr5T07550_001	EnsemblPlantsGene:GSMUA_Achr5G07550_001	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595
InterPro:LOR	InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF22	PFAM:PF04525
SEG:seg	SUPFAM:SSF54518	UniParc:UPI000296946C	UniProt:M0SWI4	MapMan:35.1	:

Description

Putative Protein LURP-one-related 8 [Source:GMGC_GENE;Acc:GSMUA_Achr5G07550_001]

Coordinates

chr5:+:5423307..5424336

Molecular Weight (calculated)

23219.1 Da

IEP (calculated)

9.828

GRAVY (calculated)

-0.075

Length

213 amino acids

Sequence
(BLAST)

001: MTKVHPNAAA AAVAELRRAE FPCAGGARAT EAEVLTVWRK SLLFNGNGFT VYDSKGNLVF RVDNYSAGSR GEVVLMDAAG RPLLTIRRKK LSLGDHWLIY
101: NGEEAVNPRF AVKKHAGLLH SKALARVTPC GSGAKSCLAY DIEGSYSHRC CAVYDDRRQQ LAEIKRKESV HGITLGHDVF RLIVQPGLDA SFAMAMVILL
201: EQMFGSRGSL LKG

Best Arabidopsis Sequence Match ( AT2G38640.1 )
(BLAST)

001: MTKVHPKFPS TCEESLCDSK AAVVLTVWKK SLLFNCDGFT VYNANGELVF RVDNYMNCPR DNIVLMDASG FPLLSIRRKK LSLGDCWMVY DGETERDPIF
101: TARKNVSIIS NRKSLAWVSA KKTVLYEIEG SYGQRSCKIL DERRNKKKTA EIKRKETVIG GVAFGKDVYK LIVESEMEPR VAMALTIILD QMFRSS

Arabidopsis Description

Protein LURP-one-related 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.