Factsheet for Bra035195.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80120.1	Bra000214.1-P	AT2G41090.1	17360592
AT1G80120.1	Bra018296.1-P	AT3G51920.1	17360592
AT1G80120.1	Bra033467.1-P	AT3G51920.1	17360592
AT1G80120.1	Bra002368.1-P	AT5G21274.1	17360592
AT1G80120.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008497.1-P	Field mustard	cytosol	73.81	73.81
AT1G80120.1	Thale cress	cytosol	71.43	71.43
CDX87294	Canola	cytosol	80.0	65.37
VIT_09s0002g06920.t01	Wine grape	cytosol	52.38	53.14
Bra001606.1-P	Field mustard	cytosol	51.9	51.17
Bra027206.1-P	Field mustard	cytosol	52.38	50.23
KRH47444	Soybean	cytosol	51.9	49.77
KRH23583	Soybean	cytosol	50.95	48.64
KRH44464	Soybean	cytosol	50.48	48.4
KRH09722	Soybean	cytosol	50.48	48.4
GSMUA_Achr3P13680_001	Banana	cytosol	23.33	37.4
TraesCS3B01G340800.1	Wheat	cytosol	37.62	35.91
TraesCS3D01G306600.1	Wheat	cytosol	37.14	35.62
HORVU3Hr1G075150.1	Barley	cytosol	37.14	35.62
TraesCS3A01G296300.1	Wheat	cytosol	36.67	35.0
Bra017111.1-P	Field mustard	cytosol	31.43	33.67
EES03690	Sorghum	cytosol	35.71	33.63
Bra005092.1-P	Field mustard	cytosol	30.95	33.33
HORVU1Hr1G077760.1	Barley	cytosol	36.19	33.04
Os01t0771000-01	Rice	cytosol	35.24	32.6
Bra000080.1-P	Field mustard	cytosol	30.0	32.31
Zm00001d043318_P001	Maize	cytosol	34.29	32.29
Os05t0510100-01	Rice	cytosol	36.19	32.07
Bra000079.1-P	Field mustard	cytosol	29.52	31.63
TraesCS1B01G341900.1	Wheat	cytosol	35.24	31.49
TraesCS1D01G330600.1	Wheat	cytosol	35.24	31.36
Zm00001d000310_P001	Maize	cytosol	36.19	31.15
EES18481	Sorghum	cytosol	35.24	30.71
TraesCS1A01G328100.1	Wheat	cytosol	35.24	30.45
Bra025487.1-P	Field mustard	cytosol	27.62	26.01
Bra025486.1-P	Field mustard	cytosol	27.62	26.01
Bra021544.1-P	Field mustard	cytosol	24.29	24.52
Bra027804.1-P	Field mustard	cytosol	20.95	23.04
Bra001544.1-P	Field mustard	cytosol	22.38	22.6
Bra039698.1-P	Field mustard	cytosol	20.48	21.39
Bra039697.1-P	Field mustard	cytosol, extracellular, peroxisome	20.48	21.39
Bra039696.1-P	Field mustard	cytosol	20.48	21.39

Protein Annotations

EnsemblPlants:Bra035195.1	EnsemblPlants:Bra035195.1-P	EnsemblPlantsGene:Bra035195	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595
InterPro:LOR	InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF2	PFAM:PF04525
SUPFAM:SSF54518	UniParc:UPI0002541E9C	UniProt:M4F298	MapMan:35.1	:	:

Description

AT1G80120 (E=9e-075) | unknown protein

Coordinates

chrA07:-:22534516..22535252

Molecular Weight (calculated)

23369.6 Da

IEP (calculated)

5.418

GRAVY (calculated)

-0.513

Length

210 amino acids

Sequence
(BLAST)

001: MKGGLLVDNK FSHGQDKNLT VRKTSLFFAG DGFTVYDCKG TLVFRVDSYG GPNNRDTDEV VLMDAHGRCL LTLRRKAEFA TEMGGVSRGE NRRSKTDLRS
101: EEIVDDREEQ RDGGGLRGVR MQRVLIEGNF GQSSCTVGEA ETRRKVAEIR RKVDASTNVM LGKDVFSLNV KAGFDGAFAM GLVLVLDQIY GDDYVEVGEE
201: QVHPYAEDHY

Best Arabidopsis Sequence Match ( AT1G80120.1 )
(BLAST)

001: MKGGLLVDDE FIHGEERSLT VRKTSLFFAG DGFTVYDCKG SLVFRVDSYG GPNTRDTDEV VLMDAHGRCL LTLRRKRPSL RRRWEGYLGE RSDGQKPIFG
101: VRRSSIIGRN SVTVEVYGDY QCSEYLIEGS FGARNCTVVE AETRRKVAEI RRKVDASTNV MLGKDVFSLN VKPGFDGAFA MGLVLVLDQI YGDDLLEVGE
201: EQVHPSAEDL

Arabidopsis Description

Protein LURP-one-related 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.