Factsheet for Bra025486.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3
peroxisome 1
extracellular 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025487.1-P	Field mustard	cytosol	100.0	100.0
AT5G41590.1	Thale cress	cytosol	83.41	84.16
VIT_02s0025g00500.t01	Wine grape	cytosol	50.22	50.91
KRH41249	Soybean	cytosol	47.09	46.88
KRH59981	Soybean	cytosol, mitochondrion	46.19	44.98
KRH77592	Soybean	cytosol	45.74	44.93
KRH27882	Soybean	cytosol	46.19	44.02
PGSC0003DMT400031740	Potato	plastid	45.74	43.4
Solyc08g081680.1.1	Tomato	nucleus	44.39	42.86
Bra000080.1-P	Field mustard	cytosol	35.43	40.51
Bra017111.1-P	Field mustard	cytosol	34.98	39.8
Bra005092.1-P	Field mustard	cytosol	34.53	39.49
Bra000079.1-P	Field mustard	cytosol	34.53	39.29
Bra008497.1-P	Field mustard	cytosol	30.49	32.38
Bra027206.1-P	Field mustard	cytosol	30.94	31.51
Bra001606.1-P	Field mustard	cytosol	30.04	31.46
Bra035195.1-P	Field mustard	cytosol	26.01	27.62
Bra027804.1-P	Field mustard	cytosol	21.52	25.13
Bra001544.1-P	Field mustard	cytosol	22.87	24.52
Bra021544.1-P	Field mustard	cytosol	22.42	24.04
Bra039697.1-P	Field mustard	cytosol, extracellular, peroxisome	21.08	23.38
Bra039698.1-P	Field mustard	cytosol	21.08	23.38
Bra039696.1-P	Field mustard	cytosol	20.63	22.89

Protein Annotations

EnsemblPlants:Bra025486.1	EnsemblPlants:Bra025486.1-P	EnsemblPlantsGene:Bra025486	Gene3D:3.20.90.20	InterPro:IPR025659	InterPro:IPR038595
InterPro:LOR	InterPro:LOR_sf	InterPro:Tubby-like_C	PANTHER:PTHR31087	PANTHER:PTHR31087:SF14	PFAM:PF04525
SUPFAM:SSF54518	UniParc:UPI00025452AD	UniProt:M4E9N0	MapMan:35.1	:	:

Description

AT5G41590 (E=3e-105) | unknown protein

Coordinates

chrA04:-:8420952..8422404

Molecular Weight (calculated)

25030.4 Da

IEP (calculated)

9.854

GRAVY (calculated)

-0.186

Length

223 amino acids

Sequence
(BLAST)

001: MFPFSKHRSR SVHGDDVLSS TQPIVAVTSI VETGGACTTL TVWRKSLLVS CEGFTVIDSN GDLIYRVDNY ARTRPEELIL MDKDGNSVLL MHRTKKITLA
101: GSWGIYEAKD TNGEAKVPKS PIWYMRKNLK MNILSTNSNI LAYVYSAPYD KKNSYVIKGS YRCKSCKIMH VPSNRTVVEI KRKEARTKGV RFGSDVFDLV
201: VSPDFDTGLA MALVLLLDQM FSK

Best Arabidopsis Sequence Match ( AT5G41590.1 )
(BLAST)

001: MFPFLKQRSR SVHGEDAPSS TESTVSVAAA DIGGACTTLT VWRKSLLVSC EGFTVIDSNG DLIYRVDNYA RTRPEELILM DKDGNSLLLM HRTKKITLVD
101: SWGIYEANDT KGETKIPKCP TWYMRKNLKM NILSTKSDIL AYVYSGSFDK KNSYIIKGSY RCKSCKIVHV PLNKTVVEIK RKEVRTKGVR FGSDVFDLVV
201: NPGFDTGLAM ALVLLLDQMF S

Arabidopsis Description

Protein LURP-one-related 17 [Source:UniProtKB/Swiss-Prot;Acc:A0MFL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.