Factsheet for TraesCS2B01G518500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G490600.1	Wheat	cytosol, golgi	99.68	99.68
TraesCS2A01G490200.1	Wheat	cytosol	99.05	99.05
HORVU2Hr1G109500.1	Barley	cytosol	96.85	96.85
Os03t0831800-01	Rice	cytosol, plastid	78.55	82.72
TraesCS5B01G499200.1	Wheat	cytosol	57.73	60.0
TraesCS1B01G057100.1	Wheat	cytosol	38.17	59.31
TraesCS3B01G162400.1	Wheat	cytosol	56.78	59.21
TraesCS3B01G253300.1	Wheat	cytosol	19.56	19.2

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.4.1.1	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR11024	PANTHER:PTHR11024:SF9	SMART:SM00320	SUPFAM:SSF50978	InterPro:Sec13/Seh1_fam
EnsemblPlantsGene:TraesCS2B01G518500	EnsemblPlants:TraesCS2B01G518500.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:713675123..713676076

Molecular Weight (calculated)

33968.1 Da

IEP (calculated)

5.575

GRAVY (calculated)

-0.099

Length

317 amino acids

Sequence
(BLAST)

001: MSSKKIELDH KDMVHDSAID YYGKRLATAS SDSTVKITNI GGASAPSQLV ATLTGHYGPV WRVGWAHPKY GSILASCGYD GRVIVWKEAA TGQWSQLHVF
101: DNHKASVNSI AWAPYELGLC LACGSSDGTI SVISMRLDTG GCDAATIERA HPVGVTAVSW APAAALGSMV GSDQLVHKIV SGGFDCVVKV WEFVNGGWKL
201: ESALVSDMHK ECVRDVSWAP VLGLAKSTIA SASQDGKVVI WTSGKGGGKW EGKLMRDFEA PVWRVSWSLT GNILSVAAGE GDITLWKESS DGQWESLWTK
301: ASEEPPQEEQ AIEEAMQ

Best Arabidopsis Sequence Match ( AT2G30050.1 )
(BLAST)

001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP

Arabidopsis Description

SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.