Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G518500.1 | Wheat | cytosol, golgi | 96.85 | 96.85 |
| TraesCS2D01G490600.1 | Wheat | cytosol, golgi | 96.53 | 96.53 |
| TraesCS2A01G490200.1 | Wheat | cytosol | 95.9 | 95.9 |
| Os03t0831800-01 | Rice | cytosol, plastid | 78.23 | 82.39 |
| HORVU3Hr1G027730.1 | Barley | cytosol | 58.36 | 60.66 |
| HORVU3Hr1G055410.2 | Barley | cytosol | 20.5 | 20.12 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:22.4.1.1 | EMBL:AK363882 | UniProt:F2DJ14 | GO:GO:0003674 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | EnsemblPlantsGene:HORVU2Hr1G109500 |
| EnsemblPlants:HORVU2Hr1G109500.1 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR11024 | PANTHER:PTHR11024:SF9 | SMART:SM00320 | SUPFAM:SSF50978 |
| InterPro:Sec13/Seh1_fam | UniParc:UPI00020066DD | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DJ14]
Coordinates
chrchr2H:+:716818007..716820421
Molecular Weight (calculated)
33966.1 Da
IEP (calculated)
5.854
GRAVY (calculated)
-0.082
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKKIELDH KDMVHDSAID YYGKRLATAS SDSTVKITNI GGASAPSQLV ATLTGHYGPV WRVGWAHPKY GSILASCGYD GRVIVWKEAA TGQWSQLYVF
101: DNHKASVNSI AWAPYELGLC LACGSSDGTI SVISMRLDAG GYDAATIERA HPVGVTAVSW APAAPLGSMV GSGQLVHKLV SGGFDCVVKV WEFVNGGWKL
201: ESAMVSDMHK ECVRDVSWAP VLGLAKSTIA SASQDGKVVI WTSGKAGGKW EGKLMRDFEA PVWRVSWSLT GNILSVAAGE GDITLWKESS DGQWESLWTK
301: ASEEPPQEQA AIEEAMQ
101: DNHKASVNSI AWAPYELGLC LACGSSDGTI SVISMRLDAG GYDAATIERA HPVGVTAVSW APAAPLGSMV GSGQLVHKLV SGGFDCVVKV WEFVNGGWKL
201: ESAMVSDMHK ECVRDVSWAP VLGLAKSTIA SASQDGKVVI WTSGKAGGKW EGKLMRDFEA PVWRVSWSLT GNILSVAAGE GDITLWKESS DGQWESLWTK
301: ASEEPPQEQA AIEEAMQ
001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP
Arabidopsis Description
SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.