Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G518500.1 | Wheat | cytosol, golgi | 99.05 | 99.05 |
| TraesCS2D01G490600.1 | Wheat | cytosol, golgi | 98.74 | 98.74 |
| HORVU2Hr1G109500.1 | Barley | cytosol | 95.9 | 95.9 |
| Os03t0831800-01 | Rice | cytosol, plastid | 78.86 | 83.06 |
| TraesCS5A01G485600.1 | Wheat | cytosol | 57.41 | 59.67 |
| TraesCS1A01G044200.1 | Wheat | cytosol | 56.78 | 59.02 |
| TraesCS3A01G223900.1 | Wheat | cytosol | 19.56 | 19.2 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:22.4.1.1 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR11024 | PANTHER:PTHR11024:SF9 | SMART:SM00320 | SUPFAM:SSF50978 | InterPro:Sec13/Seh1_fam |
| EnsemblPlantsGene:TraesCS2A01G490200 | EnsemblPlants:TraesCS2A01G490200.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:723823678..723824631
Molecular Weight (calculated)
33910.9 Da
IEP (calculated)
5.348
GRAVY (calculated)
-0.106
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKKIELDH NDMVHDSAID YYGKRLATAS SDSTVKITSI GGASAPSQLV ATLTGHYGPV WRVGWAHPKY GSILASCGYD GRVIVWKEAA TGQWSQLHVF
101: DNHKASVNSI AWAPYELGLC LACGSSDGTI SVISMRPDTG GCDAATIERA HPVGVTAVSW APAAALGSMV GSDQLVHKIV SGGFDCVVKV WEFVNGGWKL
201: ESALVSDMHK ECVRDVSWAP VLGLAKSTIA SASQDGKVVI WTSGKGGGKW EGKLMRDFEA PVWRVSWSLT GNILSVAAGE GDITLWKESS DGQWESLWTK
301: ASEEPPQEEQ AIEEAMQ
101: DNHKASVNSI AWAPYELGLC LACGSSDGTI SVISMRPDTG GCDAATIERA HPVGVTAVSW APAAALGSMV GSDQLVHKIV SGGFDCVVKV WEFVNGGWKL
201: ESALVSDMHK ECVRDVSWAP VLGLAKSTIA SASQDGKVVI WTSGKGGGKW EGKLMRDFEA PVWRVSWSLT GNILSVAAGE GDITLWKESS DGQWESLWTK
301: ASEEPPQEEQ AIEEAMQ
001: MPGQKIETGH EDIVHDVQMD YYGKRIATAS SDCTIKITGV SNNGGSQQLA TLTGHRGPVW EVAWAHPKYG SILASCSYDG QVILWKEGNQ NQWTQDHVFT
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP
101: DHKSSVNSIA WAPHDIGLSL ACGSSDGNIS VFTARADGGW DTSRIDQAHP VGVTSVSWAP ATAPGALVSS GLLDPVYKLA SGGCDNTVKV WKLANGSWKM
201: DCFPALQKHT DWVRDVAWAP NLGLPKSTIA SGSQDGKVII WTVGKEGEQW EGKVLKDFMT PVWRVSWSLT GNLLAVSDGN NNVTVWKEAV DGEWEQVTAV
301: EP
Arabidopsis Description
SEC13BProtein transport protein SEC13 homolog B [Source:UniProtKB/Swiss-Prot;Acc:O64740]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.