Factsheet for PGSC0003DMT400027924

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 2
plasma membrane 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014240.2.1	Tomato	plasma membrane	98.4	92.98
VIT_01s0010g02210.t01	Wine grape	plasma membrane	75.43	71.27
KRG97489	Soybean	plasma membrane	73.03	68.78
KRH31393	Soybean	plasma membrane	72.34	68.06
KRH58723	Soybean	plasma membrane	71.54	67.24
KRH42617	Soybean	plasma membrane	71.31	66.88
Bra004249.1-P	Field mustard	cytosol	68.11	65.35
AT1G67720.1	Thale cress	plasma membrane	69.26	65.23
CDY01841	Canola	plasma membrane	68.69	58.98
CDX96066	Canola	plasma membrane	68.57	58.42
PGSC0003DMT400004363	Potato	plasma membrane	50.63	47.74
PGSC0003DMT400078790	Potato	plastid	26.4	31.69
PGSC0003DMT400045511	Potato	plasma membrane, vacuole	31.54	30.53

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.1	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_dom_sf	UniProt:M1AQD3	InterPro:Malectin-like_Carb-bd_dom	PFAM:PF07714
PFAM:PF12819	EnsemblPlantsGene:PGSC0003DMG400010746	PGSC:PGSC0003DMG400010746	EnsemblPlants:PGSC0003DMT400027924	PIRSF:PIRSF000615	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27003	PANTHER:PTHR27003:SF82	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF52058
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI000296D7AA	SEG:seg

Description

Leucine-rich repeat family protein / protein kinase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010746]

Coordinates

chr5:-:11413478..11420518

Molecular Weight (calculated)

97966.4 Da

IEP (calculated)

6.554

GRAVY (calculated)

-0.343

Length

875 amino acids

Sequence
(BLAST)

001: MGQGKPVVVV NANVNSQQYQ RRRDFPADSN KYCYTLKTKE RRRYLVRATF LYGSPAAEAT YPKFELYLDA TKWGTITISE SSRIYVNEMI IRAPSNSIDV
101: CLCCATTESP FISTLELRPL NLSMYATDYE DNFYLKVAAR VDFGAQSKEP IRYPDDPYDR IWDSDLKKRP NFLVDVAAGT ERINTTKYID TNTREYPPVK
201: VMQTAVVGTK GMLSYRLNLD DFPANARAFA YFAEIEDLGM NETRKFKMEH PYVPDYSNAV VNIAENANGS YTLYEPSYMN ITLDFILSFS FVKTPDSTRG
301: PLLSAMEICR YVQIAPKTDE QDVSTLNAFR SMSLGSDCPD EDGDPCVPTQ WEWVTCSTTS PPRITKITLS GKNVTGEIPR ELQHMEGLTE LWLDGNSLTG
401: PIPDMSNLVN LRIIHLENNK LTGPIPSYLG GLPSLLELDV QNNSLTGEIP SSLLTGKVTF KHEGNPNLRP ESKHSTRYKV ILGASIGGLV IILVLFAVSI
501: FFLCHFRTKV SHQKGESMRT NAKPSTTCSM ARGGSLMDEG VAYYIPQSEI EEATENFSKK IGKGSFGPVY YGRLRDGKEV AVKTMADSSS HGTKQFATEV
601: ALLSRIHHRN LVPLIGYYED DHQRMLVYEY MHNGTLRDHI TESTDKKHLD WLARLNIAED AAKGLEYLHT GCNPSIIHRD VKTSNILLDI NMRAKVSDFG
701: LSRQAEEDLT HVSSVARGTV GYLDPEYYAN QQLTEKSDVY SFGVVLLELI SGRKPFSSEE YGADWSIVHW ARSLIRKGDV ISIMDPALVG HVKVESVWRI
801: AEVAIQCVER HGTSRPRMHE ILSAIQDAIK IEKGIDKLSS SGSSKAQSSR KTLLTSFLDV ESPDISNSSL TPSAR

Best Arabidopsis Sequence Match ( AT1G67720.1 )
(BLAST)

001: MGLCLAQLAV TCLFLVPFVL SQVTEFVSID CGCSSNYTDP RTGLGWVSDS EIIKQGKPVT LANTNWNSMQ YRRRRDFPTD NKKYCYRLST KERRRYIVRT
101: TFLYGGLGSE EAYPKFQLYL DATKWATVTI QEVSRVYVEE LIVRATSSYV DVCVCCAITG SPFMSTLELR PLNLSMYATD YEDNFFLKVA ARVNFGAPNM
201: DALRYPDDPY DRIWESDINK RPNYLVGVAP GTTRINTSKT INTLTREYPP MKVMQTAVVG TQGLISYRLN LEDFPANARA YAYFAEIEEL GANETRKFKL
301: VQPYFPDYSN AVVNIAENAN GSYTLYEPSY MNVTLDFVLT FSFGKTKDST QGPLLNAIEI SKYLPISVKT DRSDVSVLDA IRSMSPDSDW ASEGGDPCIP
401: VLWSWVNCSS TSPPRVTKIA LSRKNLRGEI PPGINYMEAL TELWLDDNEL TGTLPDMSKL VNLKIMHLEN NQLSGSLPPY LAHLPNLQEL SIENNSFKGK
501: IPSALLKGKV LFKYNNNPEL QNEAQRKHFW QILGISIAAV AILLLLVGGS LVLLCALRKT KRADKGDSTE TKKKGLVAYS AVRGGHLLDE GVAYFISLPV
601: LEEATDNFSK KVGRGSFGSV YYGRMKDGKE VAVKITADPS SHLNRQFVTE VALLSRIHHR NLVPLIGYCE EADRRILVYE YMHNGSLGDH LHGSSDYKPL
701: DWLTRLQIAQ DAAKGLEYLH TGCNPSIIHR DVKSSNILLD INMRAKVSDF GLSRQTEEDL THVSSVAKGT VGYLDPEYYA SQQLTEKSDV YSFGVVLFEL
801: LSGKKPVSAE DFGPELNIVH WARSLIRKGD VCGIIDPCIA SNVKIESVWR VAEVANQCVE QRGHNRPRMQ EVIVAIQDAI RIERGNENGL KSSSSSSSKA
901: QSSRKTLLTS FLELESPDIS RNSLAPAAR

Arabidopsis Description

Probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Source:UniProtKB/Swiss-Prot;Acc:C0LGI2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.