Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G019410.1 | |
| HORVU3Hr1G019430.6 | |
| HORVU4Hr1G009800.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26200.1 | HORVU4Hr1G009800.5 | AT2G22810.1 | 14983000 |
| AT4G26200.1 | HORVU3Hr1G019410.1 | AT4G26200.1 | 14983000 |
| AT4G26200.1 | HORVU3Hr1G019430.6 | AT4G26200.1 | 14983000 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72652 | Canola | cytosol | 23.38 | 26.87 |
| KRH41440 | Soybean | cytosol | 31.17 | 16.36 |
| GSMUA_Achr4P30870_001 | Banana | cytosol | 29.87 | 16.35 |
| VIT_11s0016g02560.t01 | Wine grape | cytosol, nucleus, peroxisome | 31.17 | 16.18 |
| CDX92755 | Canola | cytosol | 29.0 | 16.11 |
| KRH60148 | Soybean | cytosol | 30.3 | 15.91 |
| Bra019117.1-P | Field mustard | cytosol | 30.74 | 15.74 |
| CDY42751 | Canola | cytosol | 30.74 | 15.74 |
| KRH74169 | Soybean | cytosol | 30.3 | 15.7 |
| KRH49039 | Soybean | cytosol | 30.3 | 15.7 |
| AT4G26200.1 | Thale cress | cytosol | 29.87 | 15.44 |
| CDY71142 | Canola | cytosol | 29.87 | 15.4 |
| Bra026456.1-P | Field mustard | cytosol | 29.87 | 15.4 |
| CDX94359 | Canola | cytosol | 29.87 | 15.4 |
| CDX89355 | Canola | cytosol | 29.44 | 15.18 |
| Solyc12g008740.1.1 | Tomato | cytosol | 28.14 | 14.98 |
| Solyc07g026900.1.1 | Tomato | cytosol | 28.57 | 14.97 |
| GSMUA_Achr10P... | Banana | cytosol | 28.14 | 14.77 |
| Os01t0192900-00 | Rice | endoplasmic reticulum, plasma membrane | 33.33 | 14.45 |
| HORVU3Hr1G016440.3 | Barley | cytosol | 17.32 | 12.82 |
| HORVU2Hr1G094230.2 | Barley | cytosol | 24.24 | 11.57 |
| HORVU4Hr1G009800.5 | Barley | cytosol, plastid | 25.11 | 10.16 |
| HORVU7Hr1G012940.1 | Barley | cytosol | 24.68 | 9.52 |
| HORVU3Hr1G098750.1 | Barley | cytosol, peroxisome | 2.16 | 8.47 |
| HORVU7Hr1G074250.1 | Barley | cytosol, peroxisome | 2.6 | 7.89 |
| HORVU3Hr1G019430.6 | Barley | cytosol, mitochondrion | 13.85 | 7.44 |
| HORVU7Hr1G053970.1 | Barley | mitochondrion | 2.16 | 6.41 |
| HORVU5Hr1G062990.1 | Barley | cytosol | 13.42 | 5.97 |
| HORVU2Hr1G030820.1 | Barley | mitochondrion | 13.85 | 5.75 |
| HORVU1Hr1G018540.17 | Barley | cytosol, golgi, plastid | 13.85 | 5.68 |
| HORVU2Hr1G063740.6 | Barley | peroxisome, vacuole | 11.26 | 5.35 |
| HORVU2Hr1G119710.1 | Barley | mitochondrion | 2.16 | 5.15 |
| HORVU5Hr1G014730.8 | Barley | cytosol, plastid, vacuole | 1.73 | 1.26 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G019410.1 | EnsemblPlantsGene:HORVU3Hr1G019410 | Gene3D:3.90.1150.10 | GO:GO:0003674 | GO:GO:0003824 | InterPro:IPR015422 |
| InterPro:PyrdxlP-dep_Trfase_dom1 | PANTHER:PTHR43795 | PANTHER:PTHR43795:SF28 | SEG:seg | UniParc:UPI000B485A7F | UniProt:A0A287KC27 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:54058162..54058855
Molecular Weight (calculated)
24563.0 Da
IEP (calculated)
6.509
GRAVY (calculated)
-0.356
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: GSPHPALPSE RIHILELCQP ALLLAIALQA FNPERVLFHC SSLQSSETMG GMLLPAASAP PLSRVATSSA HGEDSPYFAG WRAYDDDPYD AVTNPGGVIQ
101: MGLAENQVSF DLLEGFLREH PEAAGWGGAR PGSGXSDLAA RRRRRGHGRR RAEAVGPDAA RGEAQHLAGV VVPLLGARMV QGVLRQHELG HAGRCTGEDE
201: PLHGQVEQGD NAAARTTLLD QFFKQTKKDT L
101: MGLAENQVSF DLLEGFLREH PEAAGWGGAR PGSGXSDLAA RRRRRGHGRR RAEAVGPDAA RGEAQHLAGV VVPLLGARMV QGVLRQHELG HAGRCTGEDE
201: PLHGQVEQGD NAAARTTLLD QFFKQTKKDT L
001: MGLPLMMERS SNNNNVELSR VAVSDTHGED SPYFAGWKAY DENPYDESHN PSGVIQMGLA ENQVSFDLLE TYLEKKNPEG SMWGSKGAPG FRENALFQDY
101: HGLKTFRQAM ASFMEQIRGG KARFDPDRIV LTAGATAANE LLTFILADPN DALLVPTPYY PGFDRDLRWR TGVKIVPIHC DSSNHFQITP EALESAYQTA
201: RDANIRVRGV LITNPSNPLG ATVQKKVLED LLDFCVRKNI HLVSDEIYSG SVFHASEFTS VAEIVENIDD VSVKERVHIV YSLSKDLGLP GFRVGTIYSY
301: NDNVVRTARR MSSFTLVSSQ TQHMLASMLS DEEFTEKYIR INRERLRRRY DTIVEGLKKA GIECLKGNAG LFCWMNLGFL LEKKTKDGEL QLWDVILKEL
401: NLNISPGSSC HCSEVGWFRV CFANMSENTL EIALKRIHEF MDRRRRF
101: HGLKTFRQAM ASFMEQIRGG KARFDPDRIV LTAGATAANE LLTFILADPN DALLVPTPYY PGFDRDLRWR TGVKIVPIHC DSSNHFQITP EALESAYQTA
201: RDANIRVRGV LITNPSNPLG ATVQKKVLED LLDFCVRKNI HLVSDEIYSG SVFHASEFTS VAEIVENIDD VSVKERVHIV YSLSKDLGLP GFRVGTIYSY
301: NDNVVRTARR MSSFTLVSSQ TQHMLASMLS DEEFTEKYIR INRERLRRRY DTIVEGLKKA GIECLKGNAG LFCWMNLGFL LEKKTKDGEL QLWDVILKEL
401: NLNISPGSSC HCSEVGWFRV CFANMSENTL EIALKRIHEF MDRRRRF
Arabidopsis Description
ACS71-aminocyclopropane-1-carboxylate synthase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STR4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.