Factsheet for TraesCS4D01G035300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G030190.1	Barley	cytosol, nucleus	47.76	94.35
TraesCS4A01G275700.1	Wheat	plastid	93.47	92.34
HORVU4Hr1G005990.3	Barley	cytosol	88.98	90.08
TraesCS4B01G038000.1	Wheat	cytosol	88.16	88.16
Os03t0699600-01	Rice	cytosol	74.29	81.98
EER93613	Sorghum	cytosol, nucleus, plastid	77.96	75.79
Zm00001d033621_P001	Maize	cytosol, nucleus, plastid	76.33	74.5
GSMUA_Achr7P27060_001	Banana	nucleus	56.33	51.3
GSMUA_Achr4P06870_001	Banana	nucleus	55.51	50.94
AT1G55000.1	Thale cress	extracellular	43.67	48.42
KRH33942	Soybean	plastid	48.57	45.25
VIT_14s0128g00770.t01	Wine grape	cytosol	48.57	44.74
CDX71564	Canola	cytosol	46.12	43.46
Bra038977.1-P	Field mustard	cytosol	45.71	43.08
CDY45130	Canola	cytosol	45.71	43.08
KRG92859	Soybean	cytosol	48.57	42.65
Solyc01g099130.2.1	Tomato	cytosol	46.53	42.54
PGSC0003DMT400063440	Potato	cytosol	45.71	41.79

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.10.350.10	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR018392	InterPro:IPR036779	InterPro:LysM_dom
InterPro:LysM_dom_sf	PFAM:PF00646	PFAM:PF01476	PFscan:PS50181	PFscan:PS51782	PANTHER:PTHR20932
PANTHER:PTHR20932:SF8	SMART:SM00256	SMART:SM00257	SUPFAM:SSF54106	SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS4D01G035300
EnsemblPlants:TraesCS4D01G035300.1	TIGR:cd00118	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:15927355..15929031

Molecular Weight (calculated)

26917.9 Da

IEP (calculated)

8.487

GRAVY (calculated)

-0.371

Length

245 amino acids

Sequence
(BLAST)

001: MSGRAGDHAL PASSPAEPDP EAPSPMSGGD FPGDLLRAVL HRLPPADVAR AACVCRLWRA VASDRAVLEA AFRAPWGVRR VLGDPATRAF WRAASLARFA
101: LSHTVRRGDT VPGVALKYSV QVTDIKRFNN MMSDHGIYSR ERLLIPISDP EILLGSTCYI EMDHNSKREV AVFYPEGHPN GNAESVANAA AAKRRSKRIL
201: ESVRRSLHVD DGTAEYYLSV TGGDPRAAMM EFSEDLRWEQ RQTGH

Best Arabidopsis Sequence Match ( AT1G55000.2 )
(BLAST)

001: MALYCRDTLI IIFQKLTVAD LARASCVCKV WNSVATEDDL VVSAFTAPWR IKELVGRPAS VSFWRDNGIW KFAISHRICR GDSVTSLAVK YAVQVMDIKR
101: LNNMMSDHGI YSRDRLLIPI SNPEILANTT CYVELDKYAK REVAVLYLEG APKREQPVPG TNQQSNLSAD GKRRLIESLR RSMQVDDGTA LYYLAIAEGD
201: PRSALSEFSA DLRWERQAGL N

Arabidopsis Description

F-box protein At1g55000 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ32]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.