Factsheet for HORVU6Hr1G037290.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50794	Barley	cytosol, mitochondrion	100.0	100.0
HORVU2Hr1G051410.1	Barley	cytosol, mitochondrion	100.0	100.0
HORVU7Hr1G065870.1	Barley	cytosol, mitochondrion	99.33	99.33
HORVU5Hr1G064950.1	Barley	cytosol, mitochondrion	99.33	99.33
TraesCSU01G270200.1	Wheat	mitochondrion	90.6	98.54
TraesCS5D01G219900.1	Wheat	mitochondrion	89.93	97.81
TraesCS3A01G431600.1	Wheat	cytosol, mitochondrion	97.32	97.32
TraesCS1D01G205200.1	Wheat	mitochondrion	89.26	97.08
TraesCS5D01G326900.1	Wheat	mitochondrion	89.26	96.38
TraesCS3B01G187800.1	Wheat	mitochondrion	88.59	96.35
CAA33935	Rice	cytosol, mitochondrion	95.97	95.97
TraesCS5D01G456700.1	Wheat	mitochondrion	87.92	95.62
TraesCS5A01G436400.1	Wheat	mitochondrion	87.92	94.93
TraesCS5B01G204300.1	Wheat	mitochondrion	83.89	89.93
TraesCS1D01G183400.1	Wheat	mitochondrion	88.59	89.8
TraesCS6A01G192200.1	Wheat	mitochondrion	83.89	84.46
HORVU7Hr1G100990.2	Barley	mitochondrion	49.66	79.57
Os12t0488300-00	Rice	mitochondrion	77.85	78.91
HORVU4Hr1G028100.1	Barley	cytosol, golgi, mitochondrion	29.53	77.19
VIT_17s0000g02610.t01	Wine grape	cytosol, mitochondrion	21.48	58.18
GSMUA_Achr11P...	Banana	cytosol	49.66	57.36
ATCG00810.1	Thale cress	mitochondrion	43.62	40.62
CDY28604	Canola	mitochondrion	43.62	40.62
CDY21180	Canola	mitochondrion	43.62	40.62
CDX91812	Canola	mitochondrion	43.62	40.62
KRG93170	Soybean	mitochondrion	38.26	28.79
KRH56510	Soybean	plastid	38.93	27.75

Protein Annotations

MapMan:17.7.2.1.20	Gene3D:3.90.470.10	EntrezGene:4525114	ProteinID:AGP50794.1	ProteinID:AMA20285.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	EnsemblPlantsGene:HORVU6Hr1G037290	EnsemblPlants:HORVU6Hr1G037290.1	InterPro:IPR036394
HAMAP:MF_01331_B	PFAM:PF00237	ScanProsite:PS00464	PANTHER:PTHR13501	PANTHER:PTHR13501:SF7	InterPro:Ribosomal_L22
InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_sf	InterPro:Ribosomal_L22_bac/chlpt-type	UniProt:S4YYN3	SUPFAM:SSF54843	TIGRFAMs:TIGR01044
UniParc:UPI0000E8A8A0	RefSeq:YP_874692.1	:	:	:	:

Description

50S ribosomal protein L22, chloroplastic [Source:UniProtKB/TrEMBL;Acc:S4YYN3]

Coordinates

chrchr6H:-:187153541..187153990

Molecular Weight (calculated)

17688.4 Da

IEP (calculated)

11.545

GRAVY (calculated)

-0.362

Length

149 amino acids

Sequence
(BLAST)

001: MTSFKLVKYI PRIKKKKSGL RKLARKVPTD RLLKFERVFK AQKRIPMSVF KAQRVLDEIR WRYYEETVMI LNLMPYRASY PILKLVYSAA ANATHYRDFD
101: KANLFITKAE VSRSTIMKKF RPRARGRSFP IKKSMCHITI VLNIVKKSK

Best Arabidopsis Sequence Match ( ATCG00810.1 )
(BLAST)

001: MIKKRKKKSY TEVYALGQYI SMSAHKARRV IDQIRGRSYE EALMILELMP YRGCYPIFKL VYSAAANASH NKGFKETNLV ISKAEVNQGN TVKKLKPRAR
101: GRSYPIKRST CHITIVLEDI SFYQQYEEYL MYLKKPGCSN ENRNLTCYDT YSSGGLWDKK

Arabidopsis Description

RPL2250S ribosomal protein L22, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P56795]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.