Factsheet for Solyc04g015200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc04g015200.2.1
Solyc04g072580.1.1
Solyc07g045160.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47810.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT5G47810.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT5G47810.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT5G47810.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT5G47810.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT5G47810.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT5G47810.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT5G47810.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT5G47810.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT5G47810.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT5G47810.1	Solyc04g015200.2.1	AT5G47810.1	21798944
AT5G47810.1	Solyc04g072580.1.1	AT5G56630.1	21798944
AT5G47810.1	Solyc07g045160.2.1	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050810	Potato	plastid	98.25	98.25
HORVU2Hr1G081670.3	Barley	cytosol, golgi, mitochondrion	62.28	76.55
CDY17703	Canola	cytosol	73.68	75.68
Bra024914.1-P	Field mustard	cytosol	73.46	75.45
CDX77799	Canola	cytosol	73.46	75.45
KRH51223	Soybean	endoplasmic reticulum, nucleus	74.78	74.29
AT5G47810.1	Thale cress	cytosol, mitochondrion	72.15	74.1
VIT_00s0780g00010.t01	Wine grape	cytosol	74.78	73.65
GSMUA_Achr5P22470_001	Banana	cytosol	74.56	72.19
GSMUA_Achr9P19740_001	Banana	cytosol	62.28	67.14
Zm00001d020866_P001	Maize	cytosol	21.49	66.67
TraesCS2B01G350500.1	Wheat	cytosol	68.42	66.52
TraesCS2D01G331200.1	Wheat	cytosol	68.2	66.31
TraesCS2A01G331700.1	Wheat	golgi	67.98	66.1
Zm00001d025659_P001	Maize	cytosol, plastid	67.98	64.99
EES12338	Sorghum	cytosol	68.64	64.67
Os09t0479800-01	Rice	cytosol, plasma membrane	64.69	63.44
Os04t0469500-01	Rice	plasma membrane	65.79	61.6
TraesCS4B01G125000.1	Wheat	cytosol	10.09	59.74
KXG26277	Sorghum	cytosol	18.64	53.8
Solyc12g095880.1.1	Tomato	cytosol	53.07	49.9
Solyc07g045160.2.1	Tomato	cytosol	53.07	49.39
Solyc08g066100.2.1	Tomato	cytosol	51.97	47.4
Solyc04g072580.1.1	Tomato	cytosol	50.88	46.49
Solyc03g093520.2.1	Tomato	plastid	50.44	42.67
Solyc11g010450.1.1	Tomato	plastid	42.54	36.47
Solyc04g014270.2.1	Tomato	plastid	42.11	36.02

Protein Annotations

KEGG:00010+2.7.1.11	KEGG:00030+2.7.1.11	KEGG:00051+2.7.1.11	KEGG:00052+2.7.1.11	KEGG:00680+2.7.1.11	Gene3D:3.40.50.450
MapMan:35.1	InterPro:ATP_PFK	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003872
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005975	GO:GO:0006002	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0046872	GO:GO:0061615	UniProt:K4BQ23	HAMAP:MF_01981
PFAM:PF00365	PIRSF:PIRSF000534	InterPro:PKF_sf	PRINTS:PR00476	PANTHER:PTHR13697	PANTHER:PTHR13697:SF11
InterPro:Phosphofructokinase_dom	InterPro:PyroP-dep_PFK_TP0108	SUPFAM:SSF53784	EnsemblPlantsGene:Solyc04g015200.2	EnsemblPlants:Solyc04g015200.2.1	UniParc:UPI00027669CD
SEG:seg	:	:	:	:	:

Description

ATP-dependent 6-phosphofructokinase 2 [Source:Projected from Arabidopsis thaliana (AT5G47810) UniProtKB/Swiss-Prot;Acc:Q9FIK0]

Coordinates

chr4:-:5380570..5383618

Molecular Weight (calculated)

50516.4 Da

IEP (calculated)

6.793

GRAVY (calculated)

-0.161

Length

456 amino acids

Sequence
(BLAST)

001: MSNSSPSISI SNVQLQHISH LTNYNSQIKT HTNPLAVNPF FRTFPGFFLT SSDIVLRHNV LDLSGTFPSP NPPLAYHRAG PRNQILFDPV TVRAAIVTCG
101: GLCPGMNTVI RELVVGLWEL YGVREIFGIK AGYRGFYSYD PVRLNPKMVD DWHKRGGTVL ETSRGGFDLK KIVDAIQDHG FNQLYIIGGD GTMRGAVEIF
201: EELKQRKLYI SVVGIPKTVD NDVGIIDRSF GFQTAVEMAQ QAINAAHVEA ESAVNGIGLV KLMGRSTGHI ALHATLSSRD VDCCLIPEID FYLEGKGGLF
301: EFLEDRLKEM GHAVLVVAEG AGQDIIPRTE SQKTEKDESG NPVFLDVGGW LKSELKNWWS RDHPNELFTI KYIDPTYMIR AVPPNATDNS YCTLLAHSAI
401: HGVMAGYTGF VCGPINGNYA YIPVDEVAKA KNKVDTRDHK WSWVRSVSNQ PDFIRS

Best Arabidopsis Sequence Match ( AT5G47810.1 )
(BLAST)

001: MAAETSIRKL PSLSGLRHRR NPLEDNPYFH PSNGFYITPS DVILAQVAYD HSAHSQSRVA YHRAGPRREI MYEPSAVKAA IVTCGGLCPG MNTVIRELVV
101: GLWELYGVRE IYGIPAGYRG FYSMKAVKLD PKAVHDWHKK GGTVLATSRG GFHLQKIVDA IHLNGYNQVY IIGGDGTMRG AVEIFKEISL RKLEVGITVI
201: PKTVDNDVGI IDRSFGFQTA VEMAQEAISA AHVEAESAVN GIGLVKLMGR STGHIALHAT LSSRDVDCCL IPEMDFYLEG KGGLFEFLEK RLKERGHAVL
301: VVAEGAGQEM IPRNESQKQE RDESGNAVFL DVGVWFKSVL KAWWEREHPD ELFTVKYIDP TYMIRAVPAN ATDNLYCTLL AHSAIHGVMA GYTGFVPGPI
401: NGNYAYIPLE EVAQTKNQVN TRDHKWAWVR SVTNQPDFET NVKG

Arabidopsis Description

PFK2ATP-dependent 6-phosphofructokinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIK0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.