Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28939 | Canola | cytosol | 96.43 | 96.43 |
| CDY51685 | Canola | cytosol | 94.9 | 94.9 |
| AT1G70910.1 | Thale cress | cytosol | 38.78 | 47.2 |
| AT1G57730.1 | Thale cress | cytosol | 34.69 | 39.08 |
| Bra034259.1-P | Field mustard | cytosol | 29.08 | 28.79 |
| Bra007789.1-P | Field mustard | nucleus | 27.04 | 27.89 |
Protein Annotations
| EnsemblPlants:Bra022125.1 | EnsemblPlants:Bra022125.1-P | EnsemblPlantsGene:Bra022125 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF418 | PFAM:PF13639 | PFscan:PS50089 |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00025462F5 | UniProt:M4E028 | MapMan:35.2 | : |
Description
AT1G57730 (E=4e-022) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA02:-:19541990..19542580
Molecular Weight (calculated)
22228.7 Da
IEP (calculated)
4.701
GRAVY (calculated)
-0.161
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MFERGANCSL IMLESGEQAT IDIEATVSCK CSSNTLEIRL KRHTEVLLVH QRDGSVDIIG SQKAPPFPIP HILLKDIGSF DPHNIDPLLQ LDPVLCNHIY
101: VIIASKAAEE RVPGPLYISL YVTVTPHRFI GDDIPFPEQD EEMETCGICL EELNPRGEIY FDMPNCSHQF HDICISRWLR RSKTCPLCRT FADYDD
101: VIIASKAAEE RVPGPLYISL YVTVTPHRFI GDDIPFPEQD EEMETCGICL EELNPRGEIY FDMPNCSHQF HDICISRWLR RSKTCPLCRT FADYDD
001: MSEIEELVCI EASVTRKSTS NTVEIRESRR NKVTLGSSDS PAFPTPHLFL KNIVSFDEQS MYNLLYPRLQ DPNLCSILSF KIAFEAKRVP GPLYISYDVT
101: LTPQIFEEPD METCGLCLLE EQHLFDMPNC AHVFHGDCID KWLSTSNNCP LCGVEIMDDD E
101: LTPQIFEEPD METCGLCLLE EQHLFDMPNC AHVFHGDCID KWLSTSNNCP LCGVEIMDDD E
Arabidopsis Description
DEPAt1g70910 [Source:UniProtKB/TrEMBL;Acc:Q3ECE3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.